RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PSMA2P25787 234 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 CYLC1P35663 651 aaPredicted RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 MAGEA1P43355 309 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 GALK1P51570 392 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 IRAK1P51617 712 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 CCZ1BP86790 482 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 CCZ1P86791 482 aaPredicted RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 NRG1Q02297 640 aaPredicted RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 GAD2Q05329 585 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 NR1H3Q13133 447 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 AUHQ13825 339 aaKnown RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 CDO1Q16878 200 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 ARSIQ5FYB1 569 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 TMEM196Q5HYL7 178 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 MPP7Q5T2T1 576 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 MANEALQ5VSG8 457 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 FSTL4Q6MZW2 842 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 FBXL22Q6P050 247 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 TPGS1Q6ZTW0 290 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 SLC35G2Q8TBE7 412 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 CTNNBL1Q8WYA6 563 aaPredicted RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 IGSF8Q969P0 613 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 HAPLN3Q96S86 360 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 PEBP4Q96S96 227 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 OSBPL2Q9H1P3 480 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 TBC1D17Q9HA65 648 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 DLGAP2Q9P1A6 1054 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 ZNF212Q9UDV6 495 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 SALL4Q9UJQ4 1053 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 NEU3Q9UQ49 428 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 IGLV3-10A0A075B6K4 115 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 KANSL1LA0AUZ9 987 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 ANTXRLA6NF34 631 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 DRGXA6NNA5 263 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 MAN2B1O00754 1011 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 PJA2O43164 708 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 TSPAN3O60637 253 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 GPR37L1O60883 481 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 TULP3O75386 442 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 TYRP14679 529 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 TARSP26639 723 aaKnown RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 IL1R2P27930 398 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 MIPP30301 263 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 PCK1P35558 622 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 EIF2DP41214 584 aaKnown RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 HADHBP55084 474 aaKnown RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 RPS24P62847 133 aaKnown RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 SEMA3BQ13214 749 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 MTA1Q13330 715 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 ACAP1Q15027 740 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 MPPE1Q53F39 396 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 DAB2IPQ5VWQ8 1189 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 RAP1GAP2Q684P5 730 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 KIAA0907Q7Z7F0 614 aaPredicted RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 SFTPA1Q8IWL2 248 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 ACRBPQ8NEB7 543 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 ZNF564Q8TBZ8 553 aaPredicted RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 WFDC5Q8TCV5 224 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 RFFLQ8WZ73 363 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 FAM3CQ92520 227 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 RNF34Q969K3 372 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 CLDN23Q96B33 292 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 TMA16Q96EY4 203 aaKnown RBP12.85□□□□□ -0.35
USP40-205ENST00000430158 SHDQ96IW2 340 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 BBS2Q9BXC9 721 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 OSBPL6Q9BZF3 934 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 FOXQ1Q9C009 403 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 LACRTQ9GZZ8 138 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 LTB4R2Q9NPC1 389 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 PLK2Q9NYY3 685 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 ANAPC7Q9UJX3 599 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 HCN2Q9UL51 889 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 FZD10Q9ULW2 581 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 MUC6Q6W4X9 2439 aa12.85□□□□□ -0.35
USP40-205ENST00000430158 A0A0A6YYK5 440 aaPredicted RBP12.84□□□□□ -0.35
USP40-205ENST00000430158 A0A0U1RQJ8 604 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 NEDD8-MDP1E9PL57 170 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 FAM72CH0Y354 149 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 DLL1O00548 723 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 PI15O43692 258 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 PROSCO94903 275 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 CHRNB1P11230 501 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 GGCXP38435 758 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 CCINQ13939 588 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 PIGHQ14442 188 aaPredicted RBP12.84□□□□□ -0.35
USP40-205ENST00000430158 PON2Q15165 354 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 ANO4Q32M45 955 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 FAM72AQ5TYM5 149 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 FAM72DQ6L9T8 149 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 C1orf228Q6PIY5 440 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 ZNF852Q6ZMS4 543 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 SND1Q7KZF4 910 aaKnown RBP eCLIP12.84□□□□□ -0.35
USP40-205ENST00000430158 FAM72BQ86X60 149 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 CCDC105Q8IYK2 499 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 LGI2Q8N0V4 545 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 ATRIPQ8WXE1 791 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 P2RY13Q9BPV8 354 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 DDX50Q9BQ39 737 aaKnown RBP12.84□□□□□ -0.35
USP40-205ENST00000430158 CTTNBP2NLQ9P2B4 639 aa12.84□□□□□ -0.35
USP40-205ENST00000430158 IP6K2Q9UHH9 426 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms