RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CYS1Q717R9 158 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 FAM72BQ86X60 149 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.16□□□□□ -0.78
SS18-203ENST00000415083 KATNBL1Q9H079 304 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 THAP1Q9NVV9 213 aa10.16□□□□□ -0.78
SS18-203ENST00000415083 NOP56O00567 594 aaKnown RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 TXNP10599 105 aaKnown RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 GNAT1P11488 350 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SDC4P31431 198 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 PTPN9P43378 593 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 DLG2Q15700 870 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 CCDC6Q16204 474 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 GLRA4Q5JXX5 417 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 TMCO4Q5TGY1 634 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 IZUMO2Q6UXV1 221 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 GADL1Q6ZQY3 521 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 FRMD7Q6ZUT3 714 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 HACE1Q8IYU2 909 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SMC1BQ8NDV3 1235 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 RAB3IL1Q8TBN0 382 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 ATP2A3Q93084 1043 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 ECSITQ9BQ95 431 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SMARCAD1Q9H4L7 1026 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 COL4A4P53420 1690 aaPredicted RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 TRIP12Q14669 1992 aaPredicted RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 G3V2L1 256 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 LYNP07948 512 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 GSTA2P09210 222 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 NEFHP12036 1026 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 ITGAXP20702 1163 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 MLH1P40692 756 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SARNPP82979 210 aaKnown RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 POU5F1BQ06416 359 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 FBXL19Q6PCT2 694 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 ARCQ7LC44 396 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 TNS4Q8IZW8 715 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 PIWIL2Q8TC59 973 aaKnown RBP10.15□□□□□ -0.78
SS18-203ENST00000415083 DEPDC1BQ8WUY9 529 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 MTBPQ96DY7 904 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 KIF12Q96FN5 646 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 AGAP2Q99490 1192 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 WWP1Q9H0M0 922 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SNTG2Q9NY99 539 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 FZD10Q9ULW2 581 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 SNX9Q9Y5X1 595 aa10.15□□□□□ -0.78
SS18-203ENST00000415083 A0A1B0GVG6 124 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ITGA2BP08514 1039 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ZCCHC18P0CG32 403 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 PSMB4P28070 264 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 RBP5P82980 135 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 USP4Q13107 963 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 HNRNPDQ14103 355 aaKnown RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 TMEM132AQ24JP5 1023 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 TSNAXIP1Q2TAA8 658 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SLC9B1Q4ZJI4 515 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 KIAA0319Q5VV43 1072 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ATG16L1Q676U5 607 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 CTU1Q7Z7A3 348 aaKnown RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 COLGALT1Q8NBJ5 622 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 HTR3CQ8WXA8 447 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 P2RY11Q96G91 374 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 TTC1Q99614 292 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 FRMD8Q9BZ67 464 aaPredicted RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 ELP3Q9H9T3 547 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 S100A14Q9HCY8 104 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 MAN1C1Q9NR34 630 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 PACSIN3Q9UKS6 424 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 I3L4J1 428 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 CCNT2O60583 730 aaKnown RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 KRT38O76015 456 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 FYNP06241 537 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SPATA31D3P0C874 917 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 LCP1P13796 627 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 HARS2P49590 506 aaKnown RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 NDUFV1P49821 464 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SESN2P58004 480 aaPredicted RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 SOX4Q06945 474 aaPredicted RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 STXBP5Q5T5C0 1151 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 LRRC8BQ6P9F7 803 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 MTHFD1LQ6UB35 978 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SPATA31D4Q6ZUB0 917 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 HFE2Q6ZVN8 426 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 PAQR9Q6ZVX9 377 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SLC26A9Q7LBE3 791 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 FAM131BQ86XD5 332 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 CRLF3Q8IUI8 442 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 LMNTD2Q8IXW0 634 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ZNF567Q8N184 647 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ZNF419Q96HQ0 510 aaPredicted RBP10.14□□□□□ -0.79
SS18-203ENST00000415083 CAB39LQ9H9S4 337 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 TMEM30AQ9NV96 361 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.14□□□□□ -0.79
SS18-203ENST00000415083 HTTP42858 3142 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 A0A0A0MRY4 1105 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 SPECC1L-ADORA2AF8WAN1 911 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 USP12O75317 370 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 LTFP02788 710 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 PDGFRBP09619 1106 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 ARTNQ5T4W7 220 aa10.14□□□□□ -0.79
SS18-203ENST00000415083 LIMS2Q7Z4I7 341 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms