RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 IGKV1-13P0DP09 117 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ZNF12P17014 697 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ZNF19P17023 458 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TBPP20226 339 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 GRK2P25098 689 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 OAS2P29728 719 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 GRK3P35626 688 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RAG2P55895 527 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RIPK4P57078 832 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TUBA1BP68363 451 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ALDH6A1Q02252 535 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 CSTF1Q05048 431 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 LRRC63Q05C16 580 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TGM3Q08188 693 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 FAM27E3Q08E93 113 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 DMWDQ09019 674 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 GRSF1Q12849 480 aaKnown RBP eCLIP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 OLIG2Q13516 323 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 NR1D2Q14995 579 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RBMY1FQ15415 496 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TBCCQ15814 346 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PRICKLE4Q2TBC4 344 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 DEFB115Q30KQ5 88 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 CD300EQ496F6 205 aaPredicted RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 MINDY4Q4G0A6 757 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TAF1BQ53T94 588 aaPredicted RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PCOTHQ58A44 107 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RRP12Q5JTH9 1297 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TOR2AQ5JU69 321 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RGMBQ6NW40 437 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 LRRC31Q6UY01 552 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 KRT28Q7Z3Y7 464 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PIWIL3Q7Z3Z3 882 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TMC4Q7Z404 712 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 DDIASQ8IXT1 998 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 MTURNQ8N3F0 131 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 LRTM2Q8N967 370 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 CNBD1Q8NA66 436 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PIK3C3Q8NEB9 887 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 OLIG1Q8TAK6 271 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 KLHDC4Q8TBB5 520 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ZNF473Q8WTR7 871 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 BLNKQ8WV28 456 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ATRIPQ8WXE1 791 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PHKBQ93100 1093 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TAAR8Q969N4 342 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 MARS2Q96GW9 593 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 FEM1CQ96JP0 617 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 C17orf77Q96MU5 243 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 FYTTD1Q96QD9 318 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PIMREGQ9BSJ6 248 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TINAGL1Q9GZM7 467 aaPredicted RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 C16orf95Q9H693 158 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ZNF442Q9H7R0 627 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TMEM45AQ9NWC5 275 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RCC2Q9P258 522 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 THEGQ9P2T0 379 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 AMFRQ9UKV5 643 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TBX21Q9UL17 535 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 SYNPO2Q9UMS6 1093 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 TNNQ9UQP3 1299 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 USTQ9Y2C2 406 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 EMC9Q9Y3B6 208 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PTGDR2Q9Y5Y4 395 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 PUS1Q9Y606 427 aaKnown RBP eCLIP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 LTBP2Q14767 1821 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ARHGAP32A7KAX9 2087 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 RPRD2Q5VT52 1461 aaKnown RBP-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 KIAA1549Q9HCM3 1950 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 SDK2Q58EX2 2172 aa-1.32□□□□□ -2.62
RNU4-88P-201ENST00000411220 ZNF106Q9H2Y7 1883 aaKnown RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 VWDEQ8N2E2 1590 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 IGKV2D-24A0A075B6R9 120 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 SAA2-SAA4A0A096LPE2 208 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TCRBV5S1A1TA0A578 114 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TCRBV5S4A2TA0A5A2 114 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 VPS37CA5D8V6 355 aaPredicted RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TULP2O00295 520 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 CCNT2O60583 730 aaKnown RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 SHOX2O60902 331 aaPredicted RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 LYPD3O95274 346 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 AMY1AP04745 511 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 AMY2AP04746 511 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TPOP07202 933 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TUBBP07437 444 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 MT1HL1P0DM35 61 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 LGALS3P17931 250 aaKnown RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 PPIFP30405 207 aaKnown RBP-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 PGFP49763 221 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 RENBPP51606 427 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 EPHB1P54762 984 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 SPINK7P58062 85 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 TUBB4BP68371 445 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 CTAG1AP78358 180 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 HSF1Q00613 529 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 MECOMQ03112 1051 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 COX10Q12887 443 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 C16orf72Q14CZ0 275 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 ITPRIPL2Q3MIP1 535 aa-1.33□□□□□ -2.62
RNU4-88P-201ENST00000411220 GXYLT1Q4G148 440 aa-1.33□□□□□ -2.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms