RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TDRD10Q5VZ19 366 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 SFR1Q86XK3 245 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 C12orf45Q8N5I9 185 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PLEKHO2Q8TD55 490 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 C17orf50Q8WW18 174 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PRCCQ92733 491 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 FAM89AQ96GI7 184 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RBM14Q96PK6 669 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 SLITRK1Q96PX8 696 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM121Q9BTD3 319 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PHF20Q9BVI0 1012 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 EHD1Q9H4M9 534 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ARPP21Q9UBL0 812 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ZNHIT2Q9UHR6 403 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RNF112Q9ULX5 631 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PSMD13Q9UNM6 376 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 A0A088AWK7 358 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 L7N2F9 121 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PLOD3O60568 738 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ZC3H11AO75152 810 aaKnown RBP eCLIP4.74□□□□□ -1.652e-6■□□□□ 9.4
SCN1A-202ENST00000375405 MATN4O95460 622 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CFIP05156 583 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 EIF2AK2P19525 551 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF10P21506 573 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ALDH4A1P30038 563 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CMPK1P30085 196 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RPL21P46778 160 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PLA2G4AP47712 749 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CD97P48960 835 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 FMO5P49326 533 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 VBP1P61758 197 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 LSM3P62310 102 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 VAMP2P63027 116 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 FOXM1Q08050 763 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ALCAMQ13740 583 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TTI2Q6NXR4 508 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 C16orf89Q6UX73 402 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CFAP206Q8IYR0 622 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RNF31Q96EP0 1072 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 HEMGNQ9BXL5 484 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 DBNDD1Q9H9R9 158 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CRYL1Q9Y2S2 319 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 GAPVD1Q14C86 1478 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TBC1D3BA6NDS4 549 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 AIPO00170 330 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ANGPTL7O43827 346 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 KRT34O76011 436 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 CHGBP05060 677 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 OR52Z1P0C646 297 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 FCER1AP12319 257 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 IL2RBP14784 551 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 GUCY2CP25092 1073 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 STAT5AP42229 794 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 MEOX1P50221 254 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 STAT5BP51692 787 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ATP2C1P98194 919 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 COASYQ13057 564 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 DNASE1L3Q13609 305 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM132DQ14C87 1099 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 MLC1Q15049 377 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TAF1CQ15572 869 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 AAGABQ6PD74 315 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM151BQ8IW70 566 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 MREGQ8N565 214 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 ANKRD13CQ8N6S4 541 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 NIPA2Q8N8Q9 360 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 COLGALT1Q8NBJ5 622 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 NAT14Q8WUY8 206 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 MRPS31Q92665 395 aaKnown RBP4.74□□□□□ -1.65
SCN1A-202ENST00000375405 RNF145Q96MT1 663 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 NECTIN3Q9NQS3 549 aa4.74□□□□□ -1.65
SCN1A-202ENST00000375405 PRG4Q92954 1404 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EHBP1L1Q8N3D4 1523 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 WASHC1A8K0Z3 465 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 WASH3PC4AMC7 463 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RASA4BC9J798 803 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ARPC2O15144 300 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RASA4O43374 803 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 THEGLP0DJG4 465 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PECAM1P16284 738 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ITGB6P18564 788 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ITGA6P23229 1130 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MAN2A2P49641 1150 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CAV1Q03135 178 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 KDSRQ06136 332 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 DMWDQ09019 674 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TRAF2Q12933 501 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF177Q13360 481 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LRRC37A5PQ49AS3 106 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 GPAT3Q53EU6 434 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SLFN13Q68D06 897 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RNF43Q68DV7 783 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FIP1L1Q6UN15 594 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 WASH2PQ6VEQ5 465 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RASAL3Q86YV0 1011 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SMYD4Q8IYR2 804 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TTLL2Q9BWV7 592 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 OSBPL8Q9BZF1 889 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FBRSQ9HAH7 460 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms