RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 IGSF6O95976 241 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 RCVRNP35243 200 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 OTUD4Q01804 1114 aaKnown RBP10.41□□□□□ -0.74
CLIP1-202ENST00000358808 OVGP1Q12889 678 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 MAD2L1Q13257 205 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-202ENST00000358808 INSCQ1MX18 579 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 SBK1Q52WX2 424 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 SEL1L3Q68CR1 1132 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 PLEKHA7Q6IQ23 1121 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 CES5AQ6NT32 575 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 KIAA0408Q6ZU52 694 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 STRA8Q7Z7C7 330 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 RIBC1Q8N443 379 aaPredicted RBP10.41□□□□□ -0.74
CLIP1-202ENST00000358808 TARS2Q9BW92 718 aaKnown RBP10.41□□□□□ -0.74
CLIP1-202ENST00000358808 UNKQ9C0B0 810 aaKnown RBP10.41□□□□□ -0.74
CLIP1-202ENST00000358808 CYLDQ9NQC7 956 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 TBC1D13Q9NVG8 400 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 COMMD9Q9P000 198 aa10.41□□□□□ -0.74
CLIP1-202ENST00000358808 SDR42E2A6NKP2 422 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 PPP1R37O75864 691 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 NTSR2O95665 410 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 UCHL3P15374 230 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 POLR2EP19388 210 aaKnown RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 ACADLP28330 430 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 TLX1P31314 330 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 ITGA1P56199 1179 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 STXBP1P61764 594 aaKnown RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 TAF2Q6P1X5 1199 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 CXorf40AQ8TE69 158 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 CAB39LQ9H9S4 337 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 GPATCH2LQ9NWQ4 482 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 SMPD4Q9NXE4 827 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 OR10H1Q9Y4A9 318 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 GPSM3Q9Y4H4 160 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 MEGF6O75095 1541 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 GUCY1B2O75343 617 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 RAP1GAPP47736 663 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 RAD23AP54725 363 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 SRP54P61011 504 aaKnown RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 RETSATQ6NUM9 610 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 ULK3Q6PHR2 472 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 ILDR2Q71H61 639 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 ATG9AQ7Z3C6 839 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 PIK3R5Q8WYR1 880 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 PSTPIP1O43586 416 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 OR10H2O60403 315 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 SEC22BO75396 215 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 FOSL2P15408 326 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 HSD3B2P26439 372 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 LHX1P48742 406 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 MTAPQ13126 283 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 TDRD5Q8NAT2 981 aaKnown RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 TSPAN14Q8NG11 270 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 EEF1AKMT1Q8WVE0 214 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 RUBCNQ92622 972 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 RHOBTB2Q9BYZ6 727 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 EPB41L4BQ9H329 900 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 LRRC40Q9H9A6 602 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 A8MX80 341 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 TCEA3O75764 348 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 FBXO21O94952 628 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 LYNP07948 512 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 MUTP22033 750 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 SMU1Q2TAY7 513 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 FBXL19Q6PCT2 694 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 SHC4Q6S5L8 630 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 MFSD7Q6UXD7 560 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 COL23A1Q86Y22 540 aaPredicted RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 CAMK1DQ8IU85 385 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 EID3Q8N140 333 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 MTFMTQ96DP5 389 aaKnown RBP10.4□□□□□ -0.74
CLIP1-202ENST00000358808 PPP1R16AQ96I34 528 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 CHP1Q99653 195 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 CNPY3Q9BT09 278 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 GANQ9H2C0 597 aa10.4□□□□□ -0.74
CLIP1-202ENST00000358808 LTFP02788 710 aa10.4□□□□□ -0.75
CLIP1-202ENST00000358808 TPBGLP0DKB5 382 aa10.4□□□□□ -0.75
CLIP1-202ENST00000358808 FAM98BQ52LJ0 330 aaKnown RBP10.4□□□□□ -0.75
CLIP1-202ENST00000358808 ZNF484Q5JVG2 852 aa10.4□□□□□ -0.75
CLIP1-202ENST00000358808 SEPHS2Q99611 448 aa10.4□□□□□ -0.75
CLIP1-202ENST00000358808 FRMD8Q9BZ67 464 aaPredicted RBP10.4□□□□□ -0.75
CLIP1-202ENST00000358808 ZMYM5Q9UJ78 669 aa10.4□□□□□ -0.75
CLIP1-202ENST00000358808 TBC1D3BA6NDS4 549 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 CCND1P24385 295 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 TARSP26639 723 aaKnown RBP10.39□□□□□ -0.75
CLIP1-202ENST00000358808 SKIV2L2P42285 1042 aaKnown RBP10.39□□□□□ -0.75
CLIP1-202ENST00000358808 IL12RB1P42701 662 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 RXRGP48443 463 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 GCLCP48506 637 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-202ENST00000358808 PDX1P52945 283 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 CUL2Q13617 745 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 TRAPPC5Q8IUR0 188 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 MCEMP1Q8IX19 187 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 ADGRG2Q8IZP9 1017 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 FAM172AQ8WUF8 416 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 SEC16BQ96JE7 1060 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 RIBC2Q9H4K1 309 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 ZDHHC6Q9H6R6 413 aa10.39□□□□□ -0.75
CLIP1-202ENST00000358808 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-202ENST00000358808 ANKDD1BA6NHY2 528 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms