RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 NPR3P17342 541 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 FBXL16Q8N461 479 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 THUMPD3Q9BV44 507 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 AGPAT3Q9NRZ7 376 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RNF225M0QZC1 329 aaPredicted RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 DDX5P17844 614 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MAPK1P28482 360 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 GRIA3P42263 894 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SNRPFP62306 86 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MAPRE1Q15691 268 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ZNF57Q68EA5 555 aaPredicted RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SDE2Q6IQ49 451 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 THAP5Q7Z6K1 395 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 POP1Q99575 1024 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 NUAK2Q9H093 628 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RRM2P31350 389 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CDK9P50750 372 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ACTR3P61158 418 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 BNIP2Q12982 314 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SPDYE7PQ495Y7 208 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 C12orf56Q8IXR9 622 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 BPIFB6Q8NFQ5 453 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 FAM172AQ8WUF8 416 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 OLA1Q9NTK5 396 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MAPRE3Q9UPY8 281 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 A0A0G2JPF8 293 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 HNRNPCL3B7ZW38 293 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 HNRNPCL4P0DMR1 293 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ETS1P14921 441 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CYP11B2P19099 503 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 NAMPTP43490 491 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 LGALS3BPQ08380 585 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 EPHA7Q15375 998 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ZSWIM2Q8NEG5 633 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MCPH1Q8NEM0 835 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 PI4K2AQ9BTU6 479 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 AGO2Q9UKV8 859 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 UNC13AQ9UPW8 1703 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CCDC162PA2VCL2 907 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 TIMM44O43615 452 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 IFNA14P01570 189 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 HOXB6P17509 224 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RALGDSQ12967 914 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 NTRK3Q16288 839 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 NADK2Q4G0N4 442 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SGO1Q5FBB7 561 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MFSD7Q6UXD7 560 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 PRR23CQ6ZRP0 262 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ANKRD13AQ8IZ07 590 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 PLEKHA5Q9HAU0 1116 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 C8orf4Q9NR00 106 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MKLN1Q9UL63 735 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 BAIAP2Q9UQB8 552 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 A2ML1A8K2U0 1454 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 TSHRP16473 764 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CHKAP35790 457 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CRKLP46109 303 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SNAP25P60880 206 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ZBED5Q49AG3 693 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ZCCHC23Q6ZST2 131 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 HIPK3Q9H422 1215 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 NCAPD2Q15021 1401 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 H3BSA7 217 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 PRKAA2P54646 552 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MIIPQ5JXC2 388 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RALGAPA1Q6GYQ0 2036 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RASGEF1CQ8N431 466 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CCDC168Q8NDH2 2452 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 HES6Q96HZ4 224 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ADI1Q9BV57 179 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 ZNF222Q9UK12 451 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CCNT2O60583 730 aaKnown RBP6.21□□□□□ -1.42
VPS13B-203ENST00000358544 RARBP10826 455 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 CCNYL2Q5T2Q4 361 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 YME1L1Q96TA2 773 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SYT15Q9BQS2 421 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 MED28Q9H204 178 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 TMEM8AQ9HCN3 771 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 SLC17A7Q9P2U7 560 aa6.21□□□□□ -1.42
VPS13B-203ENST00000358544 UBA6A0AVT1 1052 aaPredicted RBP6.2□□□□□ -1.42
VPS13B-203ENST00000358544 BANF1O75531 89 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 GH1P01241 217 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 PTGER2P43116 358 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 ACSBG2Q5FVE4 666 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 FRMD7Q6ZUT3 714 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 SH3RF1Q7Z6J0 888 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 MICALL2Q8IY33 904 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 KATNAL2Q8IYT4 538 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 TOR1AIP2Q8NFQ8 470 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 C7orf26Q96N11 449 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 PLA2G12BQ9BX93 195 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 NCKIPSDQ9NZQ3 722 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 RPS6KL1Q9Y6S9 549 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 USP6P35125 1406 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 TBX3O15119 743 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 SRP54P61011 504 aaKnown RBP6.2□□□□□ -1.42
VPS13B-203ENST00000358544 MXD4Q14582 209 aaPredicted RBP6.2□□□□□ -1.42
VPS13B-203ENST00000358544 RAPGEFL1Q9UHV5 662 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 PTPN13Q12923 2485 aa6.2□□□□□ -1.42
VPS13B-203ENST00000358544 PRR5-ARHGAP8B1AHC4 643 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms