RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CAPSLQ8WWF8 208 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 PLEKHG4BQ96PX9 1271 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM86B1E9PN63 330 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 F9P00740 461 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 COX4I1P13073 169 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 LRPAP1P30533 357 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 TCF7P36402 384 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 IL12RB1P42701 662 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 UBAP2LQ14157 1087 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 FITM2Q8N6M3 262 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 FLCNQ8NFG4 579 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 KRT84Q9NSB2 600 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 ERAP1Q9NZ08 941 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 KLHL3Q9UH77 587 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 RSL24D1Q9UHA3 163 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 CRLS1Q9UJA2 301 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 TMCC3Q9ULS5 477 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 PLA2G4CQ9UP65 541 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 AP4B1Q9Y6B7 739 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 BCL9O00512 1426 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 IFT172Q9UG01 1749 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 TRAF3Q13114 568 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 ZNF268Q14587 947 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 CWF19L1Q69YN2 538 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM45BPQ6NSW5 357 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 MPZL3Q6UWV2 235 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 FAM126BQ8IXS8 530 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 PHACTR1Q9C0D0 580 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 ZNF70Q9UC06 446 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 POLG2Q9UHN1 485 aa19.96■□□□□ 0.79
CCDC88B-202ENST00000356786 SLC16A1P53985 500 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 ANKS3Q6ZW76 656 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 GSTCDQ8NEC7 633 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 TADA1Q96BN2 335 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 MTMR9Q96QG7 549 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 SESN1Q9Y6P5 492 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 C6orf222P0C671 652 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 BCAT1P54687 386 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 SLC12A3P55017 1021 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 DDR2Q16832 855 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 TTLL9Q3SXZ7 439 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 KCNT2Q6UVM3 1135 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 TMEM26Q6ZUK4 368 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 IRF2BP2Q7Z5L9 587 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 HS6ST3Q8IZP7 471 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 ARL8BQ9NVJ2 186 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 H0YC42 278 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 PSMD12O00232 456 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 GSC2O15499 205 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 MAPTP10636 758 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 ST13P50502 369 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 CDH17Q12864 832 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 ATP13A4Q4VNC1 1196 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 ALYREFQ86V81 257 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 SETD9Q8NE22 299 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 DEPDC7Q96QD5 511 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 C2orf81A6NN90 581 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 LIASO43766 372 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 VAPBO95292 243 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 GH1P01241 217 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 GRIA3P42263 894 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 FRG1Q14331 258 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 CLNKQ7Z7G1 428 aa19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 UBQLN1Q9UMX0 589 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-202ENST00000356786 RRM2P31350 389 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 PNPLA4P41247 253 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 ABCG1P45844 678 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 VEPH1Q14D04 833 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 AAGABQ6PD74 315 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 ECHDC2Q86YB7 292 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 MID1IP1Q9NPA3 183 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 NCANO14594 1321 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 A0A1W2PPM1 405 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 TPP1O14773 563 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 GAS2O43903 313 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 CBFA2T3O75081 653 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 BANF1O75531 89 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 AMPD1P23109 780 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 C1DQ13901 141 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 DNAJC14Q6Y2X3 702 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 CCDC80Q76M96 950 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 OR6J1Q8NGC5 347 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 APBA2Q99767 749 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 TISP43B9A030 160 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 KRT20P35900 424 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 PGS1Q32NB8 556 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 TXNRD3Q86VQ6 643 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 ACSS3Q9H6R3 686 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 RPL22P35268 128 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 PDZK1Q5T2W1 519 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 TMEM63BQ5T3F8 832 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 UBASH3BQ8TF42 649 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 MCRS1Q96EZ8 462 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 CYP3A43Q9HB55 503 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 MAN1C1Q9NR34 630 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 SPATA2Q9UM82 520 aa19.94■□□□□ 0.78
CCDC88B-202ENST00000356786 PIPSLA2A3N6 862 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 EML1O00423 815 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 USP12O75317 370 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms