RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 MAGED4Q96JG8 741 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 SLC4A9Q96Q91 983 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 HERPUD2Q9BSE4 406 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 SMARCAD1Q9H4L7 1026 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 ACP6Q9NPH0 428 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 ARMC1Q9NVT9 282 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 DDX56Q9NY93 547 aaKnown RBP8.34□□□□□ -1.07
ATG4A-201ENST00000343524 IPO11Q9UI26 975 aaKnown RBP8.34□□□□□ -1.07
ATG4A-201ENST00000343524 DNPEPQ9ULA0 475 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 PCDHGB4Q9UN71 923 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 ZNF330Q9Y3S2 320 aaPredicted RBP8.34□□□□□ -1.07
ATG4A-201ENST00000343524 ANGPTL3Q9Y5C1 460 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 PCDHGB5Q9Y5G0 923 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 EMSYQ7Z589 1322 aa8.34□□□□□ -1.07
ATG4A-201ENST00000343524 PSME4Q14997 1843 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CCDC195A0A1B0GUA6 201 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MYOCOSA0A1B0GUC4 107 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TRIM64A6NGJ6 449 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ERVV-1B6SEH8 477 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 RNF103O00237 685 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ATE1O95260 518 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 KRT1P04264 644 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 SERPINE1P05121 402 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 WEE2P0C1S8 567 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ZNF26P17031 533 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TCEA1P23193 301 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ACADSBP45954 432 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NSFP46459 744 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CYP2J2P51589 502 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 VAMP7P51809 220 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 SNRPFP62306 86 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NFATC3Q12968 1075 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NOGQ13253 232 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 IKBKEQ14164 716 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 GK3PQ14409 553 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 RFTN1Q14699 578 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 HERC3Q15034 1050 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 FAM47CQ5HY64 1035 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 AARS2Q5JTZ9 985 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ZNF618Q5T7W0 954 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 FAXCQ5TGI0 409 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 FRMD7Q6ZUT3 714 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 VASH1Q7L8A9 365 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 IGFN1Q86VF2 1251 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CPNE8Q86YQ8 564 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CTAGE3PQ8IX95 158 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MCOLN2Q8IZK6 566 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 LSMEM2Q8N112 164 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TMCO5AQ8N6Q1 288 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NAT8LQ8N9F0 302 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 BHLHE22Q8NFJ8 381 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CXorf38Q8TB03 319 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ATP2A3Q93084 1043 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TRIM63Q969Q1 353 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 VCPIP1Q96JH7 1222 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MBOAT7Q96N66 472 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ALPK1Q96QP1 1244 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 PKP2Q99959 881 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 EBF4Q9BQW3 602 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 APOL6Q9BWW8 343 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CDH19Q9H159 772 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TMEM206Q9H813 350 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 VRTNQ9H8Y1 702 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 OLAHQ9NV23 265 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TMOD3Q9NYL9 352 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 DNAJC16Q9Y2G8 782 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 HEMK1Q9Y5R4 338 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 LOXHD1Q8IVV2 1947 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 PNMA6FA0A0J9YX94 578 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 A0A1W2PPW3 197 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TCRBV9S1A1TA0A576 114 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 LRRIQ4A6NIV6 560 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TRDMT1O14717 391 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 DYNC1LI2O43237 492 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NUAK1O60285 661 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 STAM2O75886 525 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 P4HBP07237 508 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ENO2P09104 434 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MSL3P1P0C860 447 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CYP2D6P10635 497 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 BMP3P12645 472 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 GABRB2P47870 512 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NUDT2P50583 147 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 KPNA1P52294 538 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 GALNT2Q10471 571 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 PPIL2Q13356 520 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 AP3B2Q13367 1082 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 LLGL1Q15334 1064 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 BBS9Q3SYG4 887 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MGAT5BQ3V5L5 792 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TIGD2Q4W5G0 525 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CEP55Q53EZ4 464 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 PIGGQ5H8A4 983 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 KAZNQ674X7 775 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 SIGIRRQ6IA17 410 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ISLR2Q6UXK2 745 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 USP37Q86T82 979 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 AKAP14Q86UN6 197 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CATSPER3Q86XQ3 398 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ANKRD13BQ86YJ7 626 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms