RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 FBXO16Q8IX29 292 aaPredicted RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 DNAJC1Q96KC8 554 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 PLEKHG4BQ96PX9 1271 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 RBBP8Q99708 897 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 YIPF2Q9BWQ6 316 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 NMUR2Q9GZQ4 415 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 WDR41Q9HAD4 459 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 KCNQ5Q9NR82 932 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 KNL1Q8NG31 2342 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 GNG14A0A1W2PPG7 69 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 ANPEPP15144 967 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 SREBF1P36956 1147 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 CDH13P55290 713 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 RAD51Q06609 339 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 TAF2Q6P1X5 1199 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 DHRSXQ8N5I4 330 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 PIWIL2Q8TC59 973 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 FAM120BQ96EK7 910 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 OTUB1Q96FW1 271 aaPredicted RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 DEFB129Q9H1M3 183 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 SEMA4BQ9NPR2 832 aaPredicted RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 SH3BP4Q9P0V3 963 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 MAP10Q9P2G4 905 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 R3HDM2Q9Y2K5 976 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 U3KQV3 271 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 CDC42BPGQ6DT37 1551 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 E5RJQ4 531 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 CYB561D2O14569 222 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 ATG7O95352 703 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 CAPZA2P47755 286 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 CLK2P49760 499 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 CCR3P51677 355 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 EFEMP1Q12805 493 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 FASTKD3Q14CZ7 662 aaKnown RBP8.88□□□□□ -0.99
RTN3-202ENST00000339997 AP5B1Q2VPB7 878 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 KCNMB4Q86W47 210 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 OR52K1Q8NGK4 314 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 PGLYRP2Q96PD5 576 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 GALNT8Q9NY28 637 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 OVOS2A0A0G2JMS6 1433 aa8.88□□□□□ -0.99
RTN3-202ENST00000339997 TFECO14948 347 aaPredicted RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 CCNT2O60583 730 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 RGS4P49798 205 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 SRP54P61011 504 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 ZSWIM7Q19AV6 140 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 VWA5B1Q5TIE3 1220 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 STRIP1Q5VSL9 837 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 FGD2Q7Z6J4 655 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 HPS6Q86YV9 775 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 MYO1HQ8N1T3 1032 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TSPAN14Q8NG11 270 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 PSMA8Q8TAA3 256 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TMEM176AQ96HP8 235 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 PPP1R10Q96QC0 940 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 LRMDAQ9H2I8 198 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NRDE2Q9H7Z3 1164 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 ACTR8Q9H981 624 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NMRAL1Q9HBL8 299 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 ENTPD7Q9NQZ7 604 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 RAD18Q9NS91 495 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 PNPOQ9NVS9 261 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NDUFAF1Q9Y375 327 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CPS1P31327 1500 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 RPS6KA5O75582 802 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 SP100P23497 879 aaPredicted RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 RPL22P35268 128 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 GP5P40197 560 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CSTF3Q12996 717 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 SLC45A4Q5BKX6 768 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 UNC5AQ6ZN44 842 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 GIPC3Q8TF64 312 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 OSMRQ99650 979 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CAB39LQ9H9S4 337 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 GAKO14976 1311 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NCAPD2Q15021 1401 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 GLI2P10070 1586 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CASTOR2A6NHX0 329 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CBX4O00257 560 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NRP2O60462 931 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 SYNCRIPO60506 623 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 FAM20BO75063 409 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 DDHD2O94830 711 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 LDLRP01130 860 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 LRPAP1P30533 357 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 NRG1Q02297 640 aaPredicted RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 ADIGQ0VDE8 80 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 ECM1Q16610 540 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 MRNIPQ6NTE8 343 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 B3GNT6Q6ZMB0 384 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 MARK2Q7KZI7 788 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 ARMCX6Q7L4S7 300 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CHMP1BQ7LBR1 199 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TLK2Q86UE8 772 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 DCBLD1Q8N8Z6 715 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 FAM156AQ8NDB6 213 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 RORBQ92753 470 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 RCN3Q96D15 328 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 DDX4Q9NQI0 724 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 KRT84Q9NSB2 600 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 ANKEF1Q9NU02 776 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms