RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 PGRMC2O15173 223 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ACSL4O60488 711 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 FAM126BQ8IXS8 530 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ZHX1-C8orf76Q96EF9 292 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 TDRD1Q9BXT4 1180 aaKnown RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 ADPRHL2Q9NX46 363 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 TFR2Q9UP52 801 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 MYH14Q7Z406 1995 aaKnown RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 CYP27B1O15528 508 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 BNC1Q01954 994 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ADSSL1Q8N142 457 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ZNF285Q96NJ3 590 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 NAGPAQ9UK23 515 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ERGIC3Q9Y282 383 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ALG6Q9Y672 507 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 SDR42E2A6NKP2 422 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 NDUFS2O75306 463 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 CCNKO75909 580 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 NR3C2P08235 984 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 PTPN5P54829 565 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 DEFA5Q01523 94 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 IL18Q14116 193 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 PFKFB3Q16875 520 aaPredicted RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 COLEC12Q5KU26 742 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 DENND5AQ6IQ26 1287 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 TRAPPC11Q7Z392 1133 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 BHLHE22Q8NFJ8 381 aaPredicted RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 TRPV5Q9NQA5 729 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 TRNAU1APQ9NX07 287 aaKnown RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 ITIH6Q6UXX5 1313 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ENDOD1O94919 500 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 ATF6P18850 670 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 KLK7P49862 253 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 CSHL1Q14406 222 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 FAR1Q8WVX9 515 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 NT5C1AQ9BXI3 368 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 MIR1-1HGQ9H1L0 117 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 AXIN1O15169 862 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 GPD1P21695 349 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 FDFT1P37268 417 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 SPIDRQ14159 915 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 CXXC5Q7LFL8 322 aaKnown RBP13.1□□□□□ -0.31
USP47-202ENST00000339865 ANKRD7Q92527 254 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 SSR3Q9UNL2 185 aa13.1□□□□□ -0.31
USP47-202ENST00000339865 NMT1P30419 496 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 GCLCP48506 637 aaPredicted RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 NPY2RP49146 381 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 SLC22A9Q8IVM8 553 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 EMC1Q8N766 993 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 GORASP1Q9BQQ3 440 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP47-202ENST00000339865 SPAG17Q6Q759 2223 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CTSHP09668 335 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 HSD3B1P14060 373 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 ETS2P15036 469 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 ATP4AP20648 1035 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CHN2P52757 468 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 SNX17Q15036 470 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 MED22Q15528 200 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 MARK2Q7KZI7 788 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 ZNF540Q8NDQ6 660 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CASKIN2Q8WXE0 1202 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 GFM1Q96RP9 751 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 CYP3A43Q9HB55 503 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 MARK1Q9P0L2 795 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 ZMYM5Q9UJ78 669 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 RPS6KA6Q9UK32 745 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 A0A1W2PQ72 361 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 C2orf71A6NGG8 1288 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 SH3BGRLO75368 114 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 DHFRP00374 187 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 FBXO36Q8NEA4 188 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 FEZF2Q8TBJ5 459 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 MMP19Q99542 508 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 KCNF1Q9H3M0 494 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 A1CFQ9NQ94 594 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 IKZF3Q9UKT9 509 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 AAR2Q9Y312 384 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 FAM196BA6NMK8 535 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 O00370 1275 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 DCXO43602 365 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CCNT2O60583 730 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 KDM4BO94953 1096 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 LRG1P02750 347 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 TPBGLP0DKB5 382 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 FAUP35544 74 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 GPAT2Q6NUI2 795 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 NT5DC3Q86UY8 548 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CDRT15Q96T59 188 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 GIT1Q9Y2X7 761 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 NESP48681 1621 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 ITGB6P18564 788 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 CAPGP40121 348 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 RBP5P82980 135 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 TMEM62Q0P6H9 643 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 BICRALQ6AI39 1079 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 RBM44Q6ZP01 1051 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 GMCL1Q96IK5 515 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 ARHGAP9Q9BRR9 750 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 SLC6A15Q9H2J7 730 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms