RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FIG4Q92562 907 aa14.58□□□□□ -0.07
COL7A1-201ENST00000328333 DSEQ9UL01 958 aa14.58□□□□□ -0.07
COL7A1-201ENST00000328333 CYP1A1P04798 512 aaPredicted RBP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 SMIM22K7EJ46 135 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GH2P01242 217 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ETS1P14921 441 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GTF2E2P29084 291 aaKnown RBP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 NR6A1Q15406 480 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 SMTNL2Q2TAL5 461 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GPAT2Q6NUI2 795 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 SIRT2Q8IXJ6 389 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 RNF145Q96MT1 663 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 RIPK2O43353 540 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ECE2O60344 883 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 FUT11Q495W5 492 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ASXL3Q9C0F0 2248 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 NOTUMQ6P988 496 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ZDHHC17Q8IUH5 632 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ZCCHC9Q8N567 271 aaKnown RBP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 TRPV3Q8NET8 790 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 SLC39A8Q9C0K1 460 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 A1CFQ9NQ94 594 aaKnown RBP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ANKRD26Q9UPS8 1709 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 A0A088AWK7 358 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GNB5O14775 395 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 CAMTA2O94983 1202 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ZNF10P21506 573 aaPredicted RBP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 AKR1D1P51857 326 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 CDH4P55283 916 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 PDK3Q15120 406 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 PRR5LQ6MZQ0 368 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ZNF221Q9UK13 617 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 CCDC189A1A4V9 331 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 MED24O75448 989 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GLP2RO95838 553 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 DHFRP00374 187 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 ALDH1A3P47895 512 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 RPS6KA3P51812 740 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 RIPK1Q13546 671 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 GALNT18Q6P9A2 607 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 RIPOR1Q6ZS17 1223 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 TCAIMQ8N3R3 496 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 EEF1AKMT1Q8WVE0 214 aa14.58□□□□□ -0.08
COL7A1-201ENST00000328333 KCNH1O95259 989 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 MOCS2O96007 188 aaPredicted RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 RHAGQ02094 409 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 MREGQ8N565 214 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ZCCHC2Q9C0B9 1178 aaKnown RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ANKEF1Q9NU02 776 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ST3GAL5Q9UNP4 418 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 RUVBL2Q9Y230 463 aaKnown RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 SQLEQ14534 574 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 DENND5AQ6IQ26 1287 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 STK40Q8N2I9 435 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 UBE2E3Q969T4 207 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 HPDLQ96IR7 371 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 AXIN1O15169 862 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 PLA2G6O60733 806 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 NCAM1P13591 858 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 LBPP18428 481 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ITGALP20701 1170 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 RENBPP51606 427 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 OR56A4Q8NGH8 313 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ACOT12Q8WYK0 555 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 KLHL32Q96NJ5 620 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 RAB26Q9ULW5 256 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ARHGEF33A8MVX0 844 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 LSM1O15116 133 aaKnown RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 CPB1P15086 417 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 PCSK7Q16549 785 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 PGS1Q32NB8 556 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 TKFCQ3LXA3 575 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ERAP2Q6P179 960 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 TBC1D30Q9Y2I9 924 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 DYRK1BQ9Y463 629 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 GSTM5P46439 218 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 BCAT1P54687 386 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 VBP1P61758 197 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 OTUD3Q5T2D3 398 aaPredicted RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 REXO1L1PQ8IX06 675 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ANKRD13AQ8IZ07 590 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 SUN5Q8TC36 379 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ACMSDQ8TDX5 336 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 PUS3Q9BZE2 481 aaKnown RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 POLIQ9UNA4 740 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ABHD2P08910 425 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ATXN8OSP0DMR3 200 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 INSCQ1MX18 579 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ZCCHC11Q5TAX3 1644 aaKnown RBP14.57□□□□□ -0.08
COL7A1-201ENST00000328333 NFICP08651 508 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ACAP1Q15027 740 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 ATP13A5Q4VNC0 1218 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 STK32CQ86UX6 486 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 TMEM138Q9NPI0 162 aa14.57□□□□□ -0.08
COL7A1-201ENST00000328333 KPNA6O60684 536 aa14.56□□□□□ -0.08
COL7A1-201ENST00000328333 ODC1P11926 461 aa14.56□□□□□ -0.08
COL7A1-201ENST00000328333 GCLCP48506 637 aaPredicted RBP14.56□□□□□ -0.08
COL7A1-201ENST00000328333 ST3GAL1Q11201 340 aa14.56□□□□□ -0.08
COL7A1-201ENST00000328333 CDH17Q12864 832 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms