RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 YME1L1Q96TA2 773 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 ADPGKQ9BRR6 497 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 WDR11Q9BZH6 1224 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 DNAJC28Q9NX36 388 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 BFARQ9NZS9 450 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 ERGIC3Q9Y282 383 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 VWDEQ8N2E2 1590 aa13.17□□□□□ -0.3
VAMP4-201ENST00000236192 TRDMT1O14717 391 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 NPR1P16066 1061 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 PIK3R1P27986 724 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 RBL1P28749 1068 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 GRK3P35626 688 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CCT8P50990 548 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 MAPK12P53778 367 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ENPEPQ07075 957 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 KCNA1Q09470 495 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 MZT2BQ6NZ67 158 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 FOXR2Q6PJQ5 311 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CDAN1Q8IWY9 1227 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 C12orf50Q8NA57 414 aaPredicted RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 RDM1Q8NG50 284 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 SH3RF3Q8TEJ3 882 aaPredicted RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 FIG4Q92562 907 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 KCTD14Q9BQ13 255 aaPredicted RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ADAM7Q9H2U9 754 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 SPAG4Q9NPE6 437 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 NPTX2P47972 431 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 MARCKSL1P49006 195 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 RCN3Q96D15 328 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 DHX33Q9H6R0 707 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 LRRC4CQ9HCJ2 640 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 MPP6Q9NZW5 540 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 USP17L3A6NCW0 530 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 USP17L4A6NCW7 530 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 UBDO15205 165 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 INPP4BO15327 924 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CAPN15O75808 1086 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 GARTP22102 1010 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CCNCP24863 283 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 NMT1P30419 496 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ABATP80404 500 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 NSUN2Q08J23 767 aaKnown RBP eCLIP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 GPATCH4Q5T3I0 446 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 USP17L1Q7RTZ2 530 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 KCNK18Q7Z418 384 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 PCDH20Q8N6Y1 951 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ELOVL6Q9H5J4 265 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 WDR6Q9NNW5 1121 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 SNTG2Q9NY99 539 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 GMIPQ9P107 970 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ST14Q9Y5Y6 855 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ATP8B3O60423 1300 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 HECW2Q9P2P5 1572 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 OR7A10O76100 309 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CFBP00751 764 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 CYP2D6P10635 497 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 DBTP11182 482 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ATF3P18847 181 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 MGAT5Q09328 741 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 HNRNPDQ14103 355 aaKnown RBP13.16□□□□□ -0.3
VAMP4-201ENST00000236192 GARNL3Q5VVW2 1013 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 SPOCD1Q6ZMY3 1216 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 STK32CQ86UX6 486 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ANKRD13BQ86YJ7 626 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 PNPLA8Q9NP80 782 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 LMTK2Q8IWU2 1503 aa13.16□□□□□ -0.3
VAMP4-201ENST00000236192 ANKRD63C9JTQ0 380 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 AURKAO14965 403 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 B3GALNT1O75752 331 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 GM2AP17900 193 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 PAMP19021 973 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 TBXAS1P24557 533 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 RXRBP28702 533 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 HOXD11P31277 338 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 CDH6P55285 790 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 CDH15P55291 814 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SESN2P58004 480 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SMAD1Q15797 465 aaKnown RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 CYP4A22Q5TCH4 519 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 UGT2A3Q6UWM9 527 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 LRRC8DQ7L1W4 858 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SIPA1Q96FS4 1042 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 YTHDF1Q9BYJ9 559 aaKnown RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 DYRK4Q9NR20 520 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 ADAMTS6Q9UKP5 1117 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 MYO1GB0I1T2 1018 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 DYRK3O43781 588 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 UFL1O94874 794 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 TNK2Q07912 1038 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 LRP8Q14114 963 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 FASTKQ14296 549 aaKnown RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 CCDC142Q17RM4 750 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SEC14L1Q92503 715 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 PGBD4Q96DM1 585 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SLC25A23Q9BV35 468 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 MTRRQ9UBK8 725 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 UBA2Q9UBT2 640 aaPredicted RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 ASS1P00966 412 aaKnown RBP13.15□□□□□ -0.3
VAMP4-201ENST00000236192 SPIRE1Q08AE8 756 aa13.15□□□□□ -0.3
VAMP4-201ENST00000236192 CSTF3Q12996 717 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms