RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BUD23O43709 281 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 WBP4O75554 376 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TOM1L1O75674 476 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NTRK1P04629 796 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PIM1P11309 404 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NAGAP17050 411 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ALAS2P22557 587 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 RGS7P49802 495 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NT5C2P49902 561 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PEX3P56589 373 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 WDR4P57081 412 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 CTTNQ14247 550 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 FBXL19Q6PCT2 694 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MFSD6Q6ZSS7 791 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 HERC6Q8IVU3 1022 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ZSWIM2Q8NEG5 633 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 REXO5Q96IC2 774 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TXNDC15Q96J42 360 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SAMD11Q96NU1 681 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 CDADC1Q9BWV3 514 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PACSIN1Q9BY11 444 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 AGXT2Q9BYV1 514 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 STN1Q9H668 368 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 EFCAB1Q9HAE3 211 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NTN4Q9HB63 628 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 LRRC4BQ9NT99 713 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MARCOQ9UEW3 520 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PSME2Q9UL46 239 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 EDARQ9UNE0 448 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PLCL2Q9UPR0 1127 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 HCN4Q9Y3Q4 1203 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ABCB11O95342 1321 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 STK36Q9NRP7 1315 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 LOC100653049A0A140TA62 436 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 KRT34O76011 436 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TGDSO95455 350 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ALOX12P18054 663 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 CAPZA2P47755 286 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ITGA8P53708 1063 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 AQP5P55064 265 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MMRN1Q13201 1228 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SNAPC2Q13487 334 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ESCO2Q56NI9 601 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 OGFRL1Q5TC84 451 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ANKRD40Q6AI12 368 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SULT1C3Q6IMI6 304 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ANGPTL8Q6UXH0 198 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 C15orf52Q6ZUT6 534 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PODNQ7Z5L7 613 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 AMIGO1Q86WK6 493 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TMEM126BQ8IUX1 230 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TPH2Q8IWU9 490 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MSANTD3Q96H12 275 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 VPS39Q96JC1 886 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TDRD1Q9BXT4 1180 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 LIN7BQ9HAP6 207 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NINJ2Q9NZG7 142 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PKD2L1Q9P0L9 805 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 EVLQ9UI08 416 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 GJA3Q9Y6H8 435 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MYH7P12883 1935 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ERCC6L2Q5T890 1561 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 hCG_2039718K7EN88 272 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 CPNE3O75131 537 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 XRCC5P13010 732 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 NPR3P17342 541 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ADRA1DP25100 572 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SERPINB5P36952 375 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 RPL35P42766 123 aaKnown RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ARHGDIAP52565 204 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 OR2B6P58173 313 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PLD1Q13393 1074 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MESDQ14696 234 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 POU6F1Q14863 301 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 PLEKHG6Q3KR16 790 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TRIM60Q495X7 471 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 BNC2Q6ZN30 1099 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF704Q6ZNC4 412 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF767PQ75MW2 155 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 KRT74Q7RTS7 529 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SH3RF1Q7Z6J0 888 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 TRABD2AQ86V40 505 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ART4Q93070 314 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ATP6V1E2Q96A05 226 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 ARL5BQ96KC2 179 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 EYA3Q99504 573 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MYL10Q9BUA6 226 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 RAB34Q9BZG1 259 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 CCDC90BQ9GZT6 254 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 COL4A3BPQ9Y5P4 624 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 SNX8Q9Y5X2 465 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 MAU2Q9Y6X3 613 aa5.88□□□□□ -1.47
SCN1A-216ENST00000637968 BTNL10A8MVZ5 291 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 H3BNH8 94 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SH2B2O14492 632 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 MED26O95402 600 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ECDO95905 644 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 UGT2B4P06133 528 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 CYP2D6P10635 497 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 IL10P22301 178 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms