RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SERPINB11Q96P15 392 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 DDX50Q9BQ39 737 aaKnown RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 TRIM62Q9BVG3 475 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 GPR174Q9BXC1 333 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 SRRTQ9BXP5 876 aaKnown RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 INTS2Q9H0H0 1204 aaKnown RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 ITM2CQ9NQX7 267 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 ABCB8Q9NUT2 735 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 WSB2Q9NYS7 404 aaPredicted RBP10.2□□□□□ -0.78
VRK3-216ENST00000599342 GGA2Q9UJY4 613 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 NCOR2Q9Y618 2525 aa10.2□□□□□ -0.78
VRK3-216ENST00000599342 KCNJ18B7U540 433 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 CAPN9O14815 690 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 ACSL4O60488 711 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 CALCAP01258 141 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 IGLV3-27P01718 113 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 ATP5BP06576 529 aaKnown RBP10.19□□□□□ -0.78
VRK3-216ENST00000599342 HLA-EP13747 358 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 MAOBP27338 520 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 COPAP53621 1224 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 SEMA3BQ13214 749 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 MPP7Q5T2T1 576 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 PIK3R6Q5UE93 754 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 DCAF12L1Q5VU92 463 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 RFWD3Q6PCD5 774 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 ENOSF1Q7L5Y1 443 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 MFN1Q8IWA4 741 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.19□□□□□ -0.78
VRK3-216ENST00000599342 HJURPQ8NCD3 748 aaPredicted RBP10.19□□□□□ -0.78
VRK3-216ENST00000599342 CADM4Q8NFZ8 388 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 OR2T3Q8NH03 318 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 FAM81BQ96LP2 452 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 KREMEN1Q96MU8 473 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 ZSWIM1Q9BR11 485 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 NUP58Q9BVL2 599 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 IRX2Q9BZI1 471 aaPredicted RBP10.19□□□□□ -0.78
VRK3-216ENST00000599342 MIR1-1HGQ9H1L0 117 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 LHX5Q9H2C1 402 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 FBRSQ9HAH7 460 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 UBE2TQ9NPD8 197 aaPredicted RBP10.19□□□□□ -0.78
VRK3-216ENST00000599342 TLR6Q9Y2C9 796 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 NFE2L3Q9Y4A8 694 aa10.19□□□□□ -0.78
VRK3-216ENST00000599342 A0A1B0GTW7 788 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 GOLGA6L7A0A1B0GV03 622 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 UPK3BL1B0FP48 263 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 UPK3BL2E5RIL1 263 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 THAP12O43422 761 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 GADD45BO75293 160 aaPredicted RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 GABBR2O75899 941 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 KRT37O76014 449 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 LETM1O95202 739 aaPredicted RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 IGLV3-19P01714 112 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 DLDP09622 509 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 POLR2EP19388 210 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 GNA15P30679 374 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 SLC6A4P31645 630 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 RDXP35241 583 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 GPD2P43304 727 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 SGSHP51688 502 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 ST8SIA6P61647 398 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 GRIK2Q13002 908 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 NNTQ13423 1086 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 CAMK2GQ13555 558 aaPredicted RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 CDH18Q13634 790 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 FAM133BQ5BKY9 247 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 MBLAC2Q68D91 279 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 ADIPOR2Q86V24 386 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 FAM124AQ86V42 546 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 SCUBE3Q8IX30 993 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 ZCCHC9Q8N567 271 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 ZNF366Q8N895 744 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 OR2I1PQ8NGU4 316 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 DQX1Q8TE96 717 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 DNASE2BQ8WZ79 361 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 SNX19Q92543 992 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 AZIN2Q96A70 460 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 ZDHHC5Q9C0B5 715 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 TMEM245Q9H330 911 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 DNAAF2Q9NVR5 837 aaKnown RBP10.18□□□□□ -0.78
VRK3-216ENST00000599342 STIM2Q9P246 746 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 LAMA1P25391 3075 aa10.18□□□□□ -0.78
VRK3-216ENST00000599342 CEP192Q8TEP8 1941 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 METTL12A8MUP2 240 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 BCAT2O15382 392 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 MOCS2O96007 188 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 APOEP02649 317 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 DNTTP04053 509 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 CD70P32970 193 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 USP8P40818 1118 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 UBE2HP62256 183 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 SIM1P81133 766 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 SLC14A1Q13336 389 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 HNRNPDQ14103 355 aaKnown RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 MEA1Q16626 185 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 PTPRNQ16849 979 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 TTC31Q49AM3 519 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 DENND1BQ6P3S1 775 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 TRIM65Q6PJ69 517 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 UNQ6494/PRO21346Q6UXR6 183 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 KIAA0907Q7Z7F0 614 aaPredicted RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms