RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SNX19Q92543 992 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 NDRG1Q92597 394 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 PCED1AQ9H1Q7 454 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 TMEM245Q9H330 911 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 CYP3A43Q9HB55 503 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 TM9SF3Q9HD45 589 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 MARCH2Q9P0N8 246 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 ANKRD6Q9Y2G4 727 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 CKAP5Q14008 2032 aa17.21■□□□□ 0.35
SHKBP1-215ENST00000597649 SLC12A8A0AV02 714 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 PDXKO00764 312 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 TRIM49P0CI25 452 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 TRIM49CP0CI26 452 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 HOXD9P28356 352 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 HLA-FP30511 346 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 GCLMP48507 274 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 KLHL40Q2TBA0 621 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 ZNF394Q53GI3 561 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 CEP135Q66GS9 1140 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 ZC3H3Q8IXZ2 948 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 CDK5RAP1Q96SZ6 601 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 ORAI3Q9BRQ5 295 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 SLC2A11Q9BYW1 496 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 LHX5Q9H2C1 402 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 KIAA1468Q9P260 1216 aa17.2■□□□□ 0.34
SHKBP1-215ENST00000597649 A0A087WV48 116 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 H0Y8X5 98 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 BIN1O00499 593 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 TNFSF14O43557 240 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 TSPAN3O60637 253 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 CYBBP04839 570 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 VAMP7P51809 220 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 SUZ12Q15022 739 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 TRIP4Q15650 581 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 SMAD1Q15797 465 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 RAB41Q5JT25 222 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 ISM2Q6H9L7 571 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 CAVIN1Q6NZI2 390 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 BHLHA9Q7RTU4 235 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 SPATA20Q8TB22 786 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 BIRC7Q96CA5 298 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 HEXIM2Q96MH2 286 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 ARID3AQ99856 593 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 NIF3L1Q9GZT8 377 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 OSGEPQ9NPF4 335 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 MAN1B1Q9UKM7 699 aa17.19■□□□□ 0.34
SHKBP1-215ENST00000597649 MGAQ8IWI9 3026 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 ZIC2O95409 532 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 YWHAGP61981 247 aaKnown RBP eCLIP17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 RPS14P62263 151 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 CCDC157Q569K6 752 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 ZNF658Q5TYW1 1059 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 ADIPOR2Q86V24 386 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 PIGZQ86VD9 579 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 GALNT15Q8N3T1 639 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 SLC4A11Q8NBS3 891 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 UBXN6Q9BZV1 441 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 PRSS16Q9NQE7 514 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 FRMD4BQ9Y2L6 1034 aa17.18■□□□□ 0.34
SHKBP1-215ENST00000597649 TULP2O00295 520 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 PCDHGA12O60330 932 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 SEMA4FO95754 770 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 CTSKP43235 329 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 GRK6P43250 576 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 GRIA4P48058 902 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 IL9RQ01113 521 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 STIM1Q13586 685 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 FNDC3BQ53EP0 1204 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 PM20D1Q6GTS8 502 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 DHRS13Q6UX07 377 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 RSRC2Q7L4I2 434 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 KIAA0907Q7Z7F0 614 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 SCUBE3Q8IX30 993 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 PDCD7Q8N8D1 485 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 SEMA4DQ92854 862 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 IGSF8Q969P0 613 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 STRIP2Q9ULQ0 834 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 PLA2G4CQ9UP65 541 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 TRAF3IP3Q9Y228 551 aa17.17■□□□□ 0.34
SHKBP1-215ENST00000597649 MAPK13O15264 365 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 FSBPO95073 299 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 TRIM21P19474 475 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 CD27P26842 260 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 SGSHP51688 502 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 TKTL1P51854 596 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 RAD23BP54727 409 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 CLDN6P56747 220 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 ARID5AQ03989 594 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 E2F5Q15329 346 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 TEAD4Q15561 434 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 MPPE1Q53F39 396 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 PRAMEF14Q5SWL7 426 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 CHST9Q7L1S5 443 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 FMNL3Q8IVF7 1028 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 ARHGAP18Q8N392 663 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 PLD4Q96BZ4 506 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 ULBP1Q9BZM6 244 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 BTBD1Q9H0C5 482 aa17.16■□□□□ 0.34
SHKBP1-215ENST00000597649 MTG2Q9H4K7 406 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms