RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SH3BP5O60239 455 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 GABBR2O75899 941 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 PAEPP09466 180 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 HLA-EP13747 358 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 LCP1P13796 627 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CD19P15391 556 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CDK11BP21127 795 aaKnown RBP13.03□□□□□ -0.32
UPF1-203ENST00000594504 PRKCHP24723 683 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 HOXD12P35452 270 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 COPAP53621 1224 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 ADIGQ0VDE8 80 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 ENPP2Q13822 863 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 STARD3Q14849 445 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 TRIP4Q15650 581 aaPredicted RBP13.03□□□□□ -0.32
UPF1-203ENST00000594504 SGO2Q562F6 1265 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 SMYD5Q6GMV2 418 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 FMNL3Q8IVF7 1028 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 DHX40Q8IX18 779 aaKnown RBP13.03□□□□□ -0.32
UPF1-203ENST00000594504 ARHGAP18Q8N392 663 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CPXM2Q8N436 756 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CHCHD4Q8N4Q1 142 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 ZNF366Q8N895 744 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 UCMAQ8WVF2 138 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 GATA6Q92908 595 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 KREMEN1Q96MU8 473 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CDK5RAP1Q96SZ6 601 aaKnown RBP13.03□□□□□ -0.32
UPF1-203ENST00000594504 CIPCQ9C0C6 399 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 HSD3B7Q9H2F3 369 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 LRRC4Q9HBW1 653 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 LIMA1Q9UHB6 759 aaKnown RBP13.03□□□□□ -0.32
UPF1-203ENST00000594504 KIAA1257Q9ULG3 409 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 STRIP2Q9ULQ0 834 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 CNTN6Q9UQ52 1028 aa13.03□□□□□ -0.32
UPF1-203ENST00000594504 GOLGA6L7A0A1B0GV03 622 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 PCNX2A6NKB5 2137 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 YJEFN3A6XGL0 299 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 BECN2A8MW95 431 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 UPK3BL1B0FP48 263 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 UPK3BL2E5RIL1 263 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 E7ENQ6 273 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 XPO1O14980 1071 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 MSI1O43347 362 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 CYBBP04839 570 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 EPHX1P07099 455 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 SYPP08247 313 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 VDRP11473 427 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 NCAM1P13591 858 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 RGS7P49802 495 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 TPMTP51580 245 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 SGSHP51688 502 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 COPB1P53618 953 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 FKBP15Q5T1M5 1219 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 SYCP2LQ5T4T6 812 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 DCAF12L1Q5VU92 463 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 BSPRYQ5W0U4 402 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 ANKS1BQ7Z6G8 1248 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 METTL3Q86U44 580 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 FAM124AQ86V42 546 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 FAM217AQ8IXS0 508 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 KDF1Q8NAX2 398 aaPredicted RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 CYB5D2Q8WUJ1 264 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 TFAP2BQ92481 460 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 PLD4Q96BZ4 506 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 SIPA1Q96FS4 1042 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 MIR1-1HGQ9H1L0 117 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 VPS16Q9H269 839 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 SIX2Q9NPC8 291 aa13.02□□□□□ -0.33
UPF1-203ENST00000594504 DNAAF2Q9NVR5 837 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 USP36Q9P275 1121 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 CNOT1A5YKK6 2376 aaKnown RBP13.02□□□□□ -0.33
UPF1-203ENST00000594504 CACNA1BQ00975 2339 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 LRRC10BA6NIK2 292 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 METTL12A8MUP2 240 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 MEI4A8MW99 385 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 RNF225M0QZC1 329 aaPredicted RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 SYNCRIPO60506 623 aaKnown RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 GJB3O75712 270 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 KRT5P13647 590 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 HOXD9P28356 352 aaPredicted RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 HLA-FP30511 346 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 ZNF132P52740 706 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 BCAT1P54687 386 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 SLC8A3P57103 927 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 APBA1Q02410 837 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 BST2Q10589 180 aaKnown RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 KCNMA1Q12791 1236 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 IQCB1Q15051 598 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 MPPE1Q53F39 396 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 WDR45BQ5MNZ6 344 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 GJB7Q6PEY0 223 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 RABEPKQ7Z6M1 372 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 ZCCHC9Q8N567 271 aaKnown RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 CLEC4CQ8WTT0 213 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 RNF139Q8WU17 664 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 PRCCQ92733 491 aaPredicted RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 FOXJ1Q92949 421 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 TMA16Q96EY4 203 aaKnown RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 ZSWIM1Q9BR11 485 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 IL21RQ9HBE5 538 aa13.01□□□□□ -0.33
UPF1-203ENST00000594504 HESX1Q9UBX0 185 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms