RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZBTB44Q8NCP5 570 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 RNF214Q8ND24 703 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 ZNF397Q8NF99 534 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 P2RY11Q96G91 374 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 SLC39A13Q96H72 371 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 BTN2A3PQ96KV6 586 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 SEMA4AQ9H3S1 761 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 POLMQ9NP87 494 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.22■□□□□ 0.83
SS18-209ENST00000578595 CLEC4EQ9ULY5 219 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 THADAQ6YHU6 1953 aa20.22■□□□□ 0.83
SS18-209ENST00000578595 EP300Q09472 2414 aaPredicted RBP20.22■□□□□ 0.83
SS18-209ENST00000578595 PRRT4C9JH25 899 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 PROB1E7EW31 1015 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 ALDH1A2O94788 518 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 TPM3P06753 285 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 TNFAIP3P21580 790 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 GABRB2P47870 512 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 DEUP1Q05D60 604 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 SRSF5Q13243 272 aaKnown RBP20.21■□□□□ 0.83
SS18-209ENST00000578595 NR1I3Q14994 352 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 LPAL2Q16609 132 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 GEN1Q17RS7 908 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 CLEC16AQ2KHT3 1053 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 HSF5Q4G112 596 aaPredicted RBP20.21■□□□□ 0.83
SS18-209ENST00000578595 PIK3R6Q5UE93 754 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 LRSAM1Q6UWE0 723 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 ASCL5Q7RTU5 278 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 MFN1Q8IWA4 741 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 CAMKK1Q8N5S9 505 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 SLC2A11Q9BYW1 496 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 TPSD1Q9BZJ3 242 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 RRN3Q9NYV6 651 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 ADAM22Q9P0K1 906 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 XPO7Q9UIA9 1087 aaKnown RBP20.21■□□□□ 0.83
SS18-209ENST00000578595 STOML2Q9UJZ1 356 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 MYO6Q9UM54 1294 aa20.21■□□□□ 0.83
SS18-209ENST00000578595 A0A0A0MRY4 1105 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 F5H5T6 163 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 AXIN1O15169 862 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 IGLV3-25P01717 112 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CALB1P05937 261 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CISD3P0C7P0 127 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 HOXB2P14652 356 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 TACR2P21452 398 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 MMP8P22894 467 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 SCNN1AP37088 669 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CDH18Q13634 790 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CRY1Q16526 586 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 WDR5BQ86VZ2 330 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CFAP52Q8N1V2 620 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 EMC1Q8N766 993 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CPLX3Q8WVH0 158 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 BAP1Q92560 729 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 NELL1Q92832 810 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 AZIN2Q96A70 460 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 PRICKLE1Q96MT3 831 aaPredicted RBP20.2■□□□□ 0.82
SS18-209ENST00000578595 PCDHB18PQ96TA0 734 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 ABCB8Q9NUT2 735 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 SMG5Q9UPR3 1016 aaKnown RBP20.2■□□□□ 0.82
SS18-209ENST00000578595 SLC27A6Q9Y2P4 619 aa20.2■□□□□ 0.82
SS18-209ENST00000578595 CEP192Q8TEP8 1941 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 TCRBV21S2A2A0A5A6 115 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 KCNU1A8MYU2 1149 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 ZBTB24O43167 697 aaPredicted RBP20.19■□□□□ 0.82
SS18-209ENST00000578595 NTSR1P30989 418 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 FLT3P36888 993 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 RPS24P62847 133 aaKnown RBP20.19■□□□□ 0.82
SS18-209ENST00000578595 CENPCQ03188 943 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 SIM2Q14190 667 aaPredicted RBP20.19■□□□□ 0.82
SS18-209ENST00000578595 CDO1Q16878 200 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 TDRD12Q587J7 1177 aaKnown RBP20.19■□□□□ 0.82
SS18-209ENST00000578595 MS4A13Q5J8X5 152 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 CHST9Q7L1S5 443 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 HMGB4Q8WW32 186 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 TBCBQ99426 244 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 SELENOOQ9BVL4 669 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 CACNA2D2Q9NY47 1150 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 NCDNQ9UBB6 729 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 GGA2Q9UJY4 613 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 PAXBP1Q9Y5B6 917 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 OTOGLQ3ZCN5 2332 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 CKAP5Q14008 2032 aa20.19■□□□□ 0.82
SS18-209ENST00000578595 DOCK4Q8N1I0 1966 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 TMCO5BA8MYB1 307 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 H0Y626 953 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 LILRB5O75023 590 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 RPP40O75818 363 aaKnown RBP20.18■□□□□ 0.82
SS18-209ENST00000578595 UNGP13051 313 aaPredicted RBP20.18■□□□□ 0.82
SS18-209ENST00000578595 TFE3P19532 575 aaPredicted RBP20.18■□□□□ 0.82
SS18-209ENST00000578595 GGCXP38435 758 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 ATP11AP98196 1134 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 KLHL30Q0D2K2 578 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 RABGAP1LQ5R372 815 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 TMEM92Q6UXU6 159 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.18■□□□□ 0.82
SS18-209ENST00000578595 KCNV2Q8TDN2 545 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 WFIKKN2Q8TEU8 576 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 CFAP57Q96MR6 1250 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 ACOX2Q99424 681 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms