RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 DSEQ9UL01 958 aa15.73■□□□□ 0.11
CIITA-204ENST00000570546 MROH7Q68CQ1 1323 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.72■□□□□ 0.11
CIITA-204ENST00000570546 C5orf58C9J3I9 102 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 KCNK1O00180 336 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 CRABP2P29373 138 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 TNFSF9P41273 254 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 SLC11A2P49281 568 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 ZNF177Q13360 481 aaPredicted RBP15.72■□□□□ 0.11
CIITA-204ENST00000570546 KANSL1LA0AUZ9 987 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 SPDYE5A6NIY4 337 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 HNRNPCL2B2RXH8 293 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 R3HDM1Q15032 1099 aaKnown RBP15.72■□□□□ 0.11
CIITA-204ENST00000570546 SPDYE7PQ495Y7 208 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 AARS2Q5JTZ9 985 aaKnown RBP15.72■□□□□ 0.11
CIITA-204ENST00000570546 NKX2-3Q8TAU0 364 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 FBXO32Q969P5 355 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 PROCP04070 461 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 CDC25CP30307 473 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 ARHGEF7Q14155 803 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 APTXQ7Z2E3 356 aaKnown RBP15.72■□□□□ 0.11
CIITA-204ENST00000570546 SNX32Q86XE0 403 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 OR5B17Q8NGF7 314 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 ZFYVE28Q9HCC9 887 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 TPBGLP0DKB5 382 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 ERVK-10P10266 1014 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 S100A5P33763 92 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 PPP3CCP48454 512 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 PARP6Q2NL67 630 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 OR6Y1Q8NGX8 325 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 PHF21BQ96EK2 531 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 SPATA17Q96L03 361 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 APBA2Q99767 749 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 TMEM79Q9BSE2 394 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 NMRAL1Q9HBL8 299 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 RRN3Q9NYV6 651 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 CNTNAP2Q9UHC6 1331 aa15.72■□□□□ 0.11
CIITA-204ENST00000570546 DAB1O75553 588 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 NFICP08651 508 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 POLNQ7Z5Q5 900 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 RIN3Q8TB24 985 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 ADAM32Q8TC27 787 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 HASPINQ8TF76 798 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 LZICQ8WZA0 190 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 TBL1YQ9BQ87 522 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 SCUBE2Q9NQ36 999 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 TIMM13Q9Y5L4 95 aaPredicted RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 PRRG1O14668 218 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 MT-CO1P00395 513 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 MLH1P40692 756 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 ZNF157P51786 506 aaPredicted RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 CSE1LP55060 971 aaKnown RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 CHRNB3Q05901 458 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 EFEMP1Q12805 493 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 BBS12Q6ZW61 710 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 RRM2BQ7LG56 351 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 P2RX7Q99572 595 aaKnown RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 SYTL2Q9HCH5 934 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 NCALDP61601 193 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 SCARA3Q6AZY7 606 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 NET1Q7Z628 596 aaPredicted RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 TRABD2AQ86V40 505 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 PPP1R10Q96QC0 940 aaKnown RBP15.71■□□□□ 0.11
CIITA-204ENST00000570546 ACSS3Q9H6R3 686 aa15.71■□□□□ 0.11
CIITA-204ENST00000570546 CASTOR2A6NHX0 329 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 ALOX15BO15296 676 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 MMRN1Q13201 1228 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 CAPSQ13938 189 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 SHROOM1Q2M3G4 852 aaPredicted RBP15.71■□□□□ 0.1
CIITA-204ENST00000570546 USP6NLQ92738 828 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 RNF157Q96PX1 679 aa15.71■□□□□ 0.1
CIITA-204ENST00000570546 ACO2Q99798 780 aaKnown RBP15.71■□□□□ 0.1
CIITA-204ENST00000570546 ADARB2Q9NS39 739 aaKnown RBP15.71■□□□□ 0.1
CIITA-204ENST00000570546 SAC3D1A6NKF1 404 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CRTAMO95727 393 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PTDSS1P48651 473 aaKnown RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 TBCELQ5QJ74 424 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 ZNF410Q86VK4 478 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CENPLQ8N0S6 344 aaPredicted RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 SLCO1B3Q9NPD5 702 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 A0A0A0MRY4 1105 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 NKRFO15226 690 aaKnown RBP eCLIP15.7■□□□□ 0.1
CIITA-204ENST00000570546 VAPBO95292 243 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 OXCT1P55809 520 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 FASTKQ14296 549 aaKnown RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 PYDC1Q8WXC3 89 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 SPATA13Q96N96 652 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CDRT15Q96T59 188 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 KCTD14Q9BQ13 255 aaPredicted RBP15.7■□□□□ 0.1
CIITA-204ENST00000570546 DYRK4Q9NR20 520 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 GOLGA8TH3BQL2 631 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 LYPLA2O95372 231 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 PTPRAP18433 802 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CCR1P32246 355 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 NUMBP49757 651 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 GTF2H3Q13889 308 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 ZFP1Q6P2D0 407 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CCDC81Q6ZN84 652 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 RHBDL2Q9NX52 303 aa15.7■□□□□ 0.1
CIITA-204ENST00000570546 CROTQ9UKG9 612 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms