RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CCDC177Q9NQR7 707 aaPredicted RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 FAIMQ9NVQ4 179 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ARHGEF38Q9NXL2 777 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 DDX56Q9NY93 547 aaKnown RBP3.42□□□□□ -1.86
VPS35-208ENST00000568612 EPS15L1Q9UBC2 864 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 RASAL2Q9UJF2 1139 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PCDHGA2Q9Y5H1 932 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 COL4A3BPQ9Y5P4 624 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 NR2E3Q9Y5X4 410 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 SLC4A4Q9Y6R1 1079 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ARHGEF11O15085 1522 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 WDR62O43379 1518 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ARHGEF12Q9NZN5 1544 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 POGZQ7Z3K3 1410 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 PDS5BQ9NTI5 1447 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 MYO3BQ8WXR4 1341 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 ZNF521Q96K83 1311 aa3.42□□□□□ -1.86
VPS35-208ENST00000568612 FANCAO15360 1455 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 EFCAB5A4FU69 1503 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CDK13Q14004 1512 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 A0A088AWK7 358 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 A0A1W2PQ67 120 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CCDC69A6NI79 296 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 OR5K4A6NMS3 321 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SNTNA6NMZ2 147 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 LACTBL1A8MY62 500 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 RSPH10B2B2RC85 870 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PRRT4C9JH25 899 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 E7ENQ6 273 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GOLGA8MH3BSY2 632 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CYR61O00622 381 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 NDC80O14777 642 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HNRNPRO43390 633 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 NCK2O43639 380 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 NARSO43776 548 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 ACSL4O60488 711 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TMCC2O75069 709 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 FGF18O76093 207 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TOMM70O94826 608 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GNA14O95837 355 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SYF2O95926 243 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 MT-CO1P00395 513 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 SERPINC1P01008 464 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GASTP01350 101 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 S100BP04271 92 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 RSPH10BP0C881 870 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 RAP2AP10114 183 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PCNAP12004 261 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GSPT1P15170 499 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 ACADSP16219 412 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 POU3F3P20264 500 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 MAKP20794 623 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CCND1P24385 295 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PPP2R1AP30153 589 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 APOBEC3AP31941 199 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 CRHR1P34998 444 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TRIM23P36406 574 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TUBP50607 506 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HSD17B4P51659 736 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 AP3M2P53677 418 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 RAP2BP61225 183 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GNGT1P63211 74 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 OLR1P78380 273 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TMF1P82094 1093 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MRPS15P82914 257 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 ITKQ08881 620 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 GALNT1Q10472 559 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 AP1B1Q10567 949 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 KLF10Q13118 480 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PKP1Q13835 747 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TOB2Q14106 344 aaPredicted RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 FHL2Q14192 279 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 HLTFQ14527 1009 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS35-208ENST00000568612 SQLEQ14534 574 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 KIF22Q14807 665 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PSMD6Q15008 389 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 WDR43Q15061 677 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS35-208ENST00000568612 STK38Q15208 465 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TMEM95Q3KNT9 176 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 FBXO43Q4G163 708 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CDONQ4KMG0 1287 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CAVIN4Q5BKX8 364 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 IGSF11Q5DX21 431 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ANKRD20A2Q5SQ80 823 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 C6orf183Q5T699 404 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 RNASEH2BQ5TBB1 312 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 CYP4A22Q5TCH4 519 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ANKRD20A1Q5TYW2 823 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ANKRD20A3Q5VUR7 823 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 C1QL3Q5VWW1 255 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 MBNL2Q5VZF2 373 aaKnown RBP3.41□□□□□ -1.86
VPS35-208ENST00000568612 METTL21CQ5VZV1 264 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ALS2CLQ60I27 953 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 OR52E8Q6IFG1 317 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 ANO7Q6IWH7 933 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 EFCAB12Q6NXP0 572 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 TTC23LQ6PF05 361 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 C6orf89Q6UWU4 347 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 PPP1R21Q6ZMI0 780 aa3.41□□□□□ -1.86
VPS35-208ENST00000568612 CCDC129Q6ZRS4 1044 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms