RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IDUAP35475 653 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 PIK3CBP42338 1070 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 STT3AP46977 705 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 AGTR2P50052 363 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 PPATQ06203 517 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 ZNF543Q08ER8 600 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 NSUN2Q08J23 767 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS35-207ENST00000568191 GALEQ14376 348 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 SLC5A9Q2M3M2 681 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 ARL13BQ3SXY8 428 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 C6orf10Q5SRN2 563 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 FBXO38Q6PIJ6 1188 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 RASGRP3Q8IV61 690 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 CCAR1Q8IX12 1150 aaKnown RBP3.32□□□□□ -1.88
VPS35-207ENST00000568191 LAS2Q8IYD9 372 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 SMRP1Q8NCR6 262 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 WASF1Q92558 559 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 CCDC136Q96JN2 1154 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 ABHD14AQ9BUJ0 271 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 RBM38Q9H0Z9 239 aaKnown RBP3.32□□□□□ -1.88
VPS35-207ENST00000568191 STARD7Q9NQZ5 370 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 DDX21Q9NR30 783 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS35-207ENST00000568191 THSD1Q9NS62 852 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 ZBTB40Q9NUA8 1239 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 MSRB1Q9NZV6 116 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 CA14Q9ULX7 337 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 PCDHA12Q9UN75 941 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 PCDHB7Q9Y5E2 793 aa3.32□□□□□ -1.88
VPS35-207ENST00000568191 C16orf96A6NNT2 1141 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 ZNF814B7Z6K7 855 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 KPNA5O15131 536 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 NFATC1O95644 943 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 ARP10275 920 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 MST1P26927 711 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 MLH1P40692 756 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 SOX2P48431 317 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 POLD2P49005 469 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 ZNF84P51523 738 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 GAD2Q05329 585 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 MAPKAPK3Q16644 382 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 KLHDC7AQ5VTJ3 777 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 WDR93Q6P2C0 686 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 KYAT3Q6YP21 454 aaKnown RBP3.31□□□□□ -1.88
VPS35-207ENST00000568191 CYB5R4Q7L1T6 521 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 DPP9Q86TI2 863 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 RFX6Q8HWS3 928 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 RHPN2Q8IUC4 686 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 CLMNQ96JQ2 1002 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 MEIS3Q99687 375 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 WDR83Q9BRX9 315 aaKnown RBP3.31□□□□□ -1.88
VPS35-207ENST00000568191 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.31□□□□□ -1.88
VPS35-207ENST00000568191 HELLSQ9NRZ9 838 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 SELENONQ9NZV5 590 aa3.31□□□□□ -1.88
VPS35-207ENST00000568191 PNMA6EA0A0J9YXQ4 647 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 PRR23D1E9PI22 279 aaPredicted RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 RHODO00212 210 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 HNRNPDLO14979 420 aaKnown RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 KIF3BO15066 747 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 SPTLC2O15270 562 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 PPM1GO15355 546 aaPredicted RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 CBFA2T3O75081 653 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 EPN2O95208 641 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 PRR23D2P0DMB1 279 aaPredicted RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 EGR1P18146 543 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 STAT6P42226 847 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 NANOS2P60321 138 aaKnown RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 DMWDQ09019 674 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 FHL3Q13643 280 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 HLTFQ14527 1009 aaKnown RBP eCLIP3.3□□□□□ -1.88
VPS35-207ENST00000568191 SMTNL2Q2TAL5 461 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 COBLL1Q53SF7 1204 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 PIK3CD-AS1Q5SR53 167 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 TTC39AQ5SRH9 613 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 ARL6IP4Q66PJ3 421 aaKnown RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 TMEM88Q6PEY1 159 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 KIAA0408Q6ZU52 694 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 FMNL3Q8IVF7 1028 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 FBXL14Q8N1E6 418 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 SPATA3Q8NHX4 192 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 WIPF2Q8TF74 440 aaPredicted RBP3.3□□□□□ -1.88
VPS35-207ENST00000568191 TMEM174Q8WUU8 243 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 WDR60Q8WVS4 1066 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 ZFPM2Q8WW38 1151 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 PIMREGQ9BSJ6 248 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 SFXN1Q9H9B4 322 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 UTS2RQ9UKP6 389 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 TNFSF13BQ9Y275 285 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 MAN2B2Q9Y2E5 1009 aa3.3□□□□□ -1.88
VPS35-207ENST00000568191 A0A1W2PPC4 97 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 RPS10-NUDT3A0A1W2PQS6 291 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 GAGE12JA6NER3 117 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 OR2W5A6NFC9 320 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 C3orf70A6NLC5 250 aaPredicted RBP3.29□□□□□ -1.88
VPS35-207ENST00000568191 PRSS44E7EML9 344 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 NPC1O15118 1278 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 LCKP06239 509 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 ALADP13716 330 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 TGM2P21980 687 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 CASP5P51878 434 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 P2RX3P56373 397 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms