RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TOP3BO95985 862 aaKnown RBP16.74■□□□□ 0.27
CLN3-229ENST00000567963 IGLV3-19P01714 112 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 LTFP02788 710 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 ACADMP11310 421 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 OXTRP30559 389 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 SGSHP51688 502 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 KCNH2Q12809 1159 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 PLEKHG6Q3KR16 790 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 ADIPOR2Q86V24 386 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 ARHGEF19Q8IW93 802 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 TRIM59Q8IWR1 403 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 UNC45BQ8IWX7 931 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 OR2I1PQ8NGU4 316 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 WFIKKN2Q8TEU8 576 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 TMEM245Q9H330 911 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 ABCB8Q9NUT2 735 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 DNAAF2Q9NVR5 837 aaKnown RBP16.74■□□□□ 0.27
CLN3-229ENST00000567963 PLA2G4CQ9UP65 541 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 CTNND2Q9UQB3 1225 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 USP24Q9UPU5 2620 aa16.74■□□□□ 0.27
CLN3-229ENST00000567963 FBXO21O94952 628 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 GNA14O95837 355 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 HLA-EP13747 358 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SPINK2P20155 84 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 MARSP56192 900 aaKnown RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 CAMK2GQ13555 558 aaPredicted RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 MPP7Q5T2T1 576 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 PIK3R6Q5UE93 754 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 NUGGCQ68CJ6 796 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 RFWD3Q6PCD5 774 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 CHST9Q7L1S5 443 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 AHI1Q8N157 1196 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-229ENST00000567963 CYB5D2Q8WUJ1 264 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 GOLGA1Q92805 767 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 NUP58Q9BVL2 599 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 IRX2Q9BZI1 471 aaPredicted RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 GGA2Q9UJY4 613 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 CNTN6Q9UQ52 1028 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 GOLGA6L7A0A1B0GV03 622 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 METTL12A8MUP2 240 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 MEI4A8MW99 385 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 C1QTNF9BB2RNN3 333 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 BIN1O00499 593 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 IRAK2O43187 625 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 GJB3O75712 270 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 PROS1P07225 676 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 C1QTNF9P0C862 333 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 C7P10643 843 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 PABPC1P11940 636 aaKnown RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 CD59P13987 128 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SLC6A4P31645 630 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 GPD2P43304 727 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 RPL34P49207 117 aaKnown RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 SLC11A2P49281 568 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 STX17P56962 302 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 RING1Q06587 406 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SLC14A1Q13336 389 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 PTPRNQ16849 979 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 FAM133BQ5BKY9 247 aaKnown RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 DCAF12L1Q5VU92 463 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SCUBE3Q8IX30 993 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 OR2T3Q8NH03 318 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 AZIN2Q96A70 460 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 KREMEN1Q96MU8 473 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SCNM1Q9BWG6 230 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 SRRTQ9BXP5 876 aaKnown RBP16.73■□□□□ 0.27
CLN3-229ENST00000567963 MIS12Q9H081 205 aa16.73■□□□□ 0.27
CLN3-229ENST00000567963 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-229ENST00000567963 CEP295Q9C0D2 2601 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 CACNA1EQ15878 2313 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 A0A1B0GTW7 788 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 ACSL4O60488 711 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 TBL1XO60907 577 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 GADD45BO75293 160 aaPredicted RBP16.72■□□□□ 0.27
CLN3-229ENST00000567963 AFPP02771 609 aaKnown RBP16.72■□□□□ 0.27
CLN3-229ENST00000567963 FYNP06241 537 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 TBX4P57082 545 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 PAK1Q13153 545 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 FNDC3BQ53EP0 1204 aaKnown RBP16.72■□□□□ 0.27
CLN3-229ENST00000567963 MBLAC2Q68D91 279 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 UNQ6494/PRO21346Q6UXR6 183 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 CACUL1Q86Y37 369 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 WFDC5Q8TCV5 224 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 ADAM33Q9BZ11 813 aa16.72■□□□□ 0.27
CLN3-229ENST00000567963 SPAARA0A1B0GVQ0 90 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 ATP5BP06576 529 aaKnown RBP16.71■□□□□ 0.27
CLN3-229ENST00000567963 DLDP09622 509 aaKnown RBP16.71■□□□□ 0.27
CLN3-229ENST00000567963 SIM1P81133 766 aaPredicted RBP16.71■□□□□ 0.27
CLN3-229ENST00000567963 NADSYN1Q6IA69 706 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 ZNF366Q8N895 744 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 ZDHHC5Q9C0B5 715 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 MIR1-1HGQ9H1L0 117 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 ST7Q9NRC1 585 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 NAALADL1Q9UQQ1 740 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 TLR6Q9Y2C9 796 aa16.71■□□□□ 0.27
CLN3-229ENST00000567963 MUC22E2RYF6 1773 aaPredicted RBP16.71■□□□□ 0.27
CLN3-229ENST00000567963 CD70P32970 193 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 FAM193AP78312 1265 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 GRIK2Q13002 908 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms