RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SUMF1Q8NBK3 374 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 ADAM32Q8TC27 787 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 RNF34Q969K3 372 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 BTN2A3PQ96KV6 586 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 HHIPQ96QV1 700 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 FAM204AQ9H8W3 233 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 NOCTQ9UK39 431 aaKnown RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 CDV3Q9UKY7 258 aaKnown RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 STAP1Q9ULZ2 295 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 MYO6Q9UM54 1294 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 SMG5Q9UPR3 1016 aaKnown RBP13.91□□□□□ -0.18
CLK3-216ENST00000564468 PLXND1Q9Y4D7 1925 aa13.91□□□□□ -0.18
CLK3-216ENST00000564468 CEP192Q8TEP8 1941 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 A0A1W2PQC6 194 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 SGK1O00141 431 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 TRIM24O15164 1050 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 F9P00740 461 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 CYP1A1P04798 512 aaPredicted RBP13.9□□□□□ -0.18
CLK3-216ENST00000564468 HNRNPLP14866 589 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-216ENST00000564468 FERP16591 822 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 ABCB4P21439 1286 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 HOXD9P28356 352 aaPredicted RBP13.9□□□□□ -0.18
CLK3-216ENST00000564468 CCR1P32246 355 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 MATKP42679 507 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 ARID5AQ03989 594 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 DMWDQ09019 674 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 TAF5Q15542 800 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 PIK3R6Q5UE93 754 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 NAA35Q5VZE5 725 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 PRR23BQ6ZRT6 265 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 SND1Q7KZF4 910 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-216ENST00000564468 C11orf74Q86VG3 221 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 SFTPA1Q8IWL2 248 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 CHPFQ8IZ52 775 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 HJURPQ8NCD3 748 aaPredicted RBP13.9□□□□□ -0.18
CLK3-216ENST00000564468 WFIKKN2Q8TEU8 576 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 GAB3Q8WWW8 586 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 PIWIL1Q96J94 861 aaKnown RBP13.9□□□□□ -0.18
CLK3-216ENST00000564468 CBX8Q9HC52 389 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 DDIT4Q9NX09 232 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-216ENST00000564468 GMEB2Q9UKD1 530 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 PAXBP1Q9Y5B6 917 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 ABCA7Q8IZY2 2146 aa13.9□□□□□ -0.18
CLK3-216ENST00000564468 A0A1B0GTH6 734 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 PRRT4C9JH25 899 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 TEX33O43247 280 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 HRO43593 1189 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 TBL1XO60907 577 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 GRAP2O75791 330 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 RPP40O75818 363 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 MOCS2O96007 188 aaPredicted RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 HOXB2P14652 356 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 PXNP49023 591 aaPredicted RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 RNASE9P60153 205 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 FMO1Q01740 532 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 EIF4EBP2Q13542 120 aaPredicted RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 BYSLQ13895 437 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 ZSCAN23Q3MJ62 389 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 USP39Q53GS9 565 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 FAM133BQ5BKY9 247 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 ZC3H12AQ5D1E8 599 aaKnown RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 FAM102AQ5T9C2 384 aaPredicted RBP13.89□□□□□ -0.19
CLK3-216ENST00000564468 LAIR1Q6GTX8 287 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 ARCQ7LC44 396 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 RASSF3Q86WH2 238 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 XYLT1Q86Y38 959 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 SLC20A1Q8WUM9 679 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 CPA5Q8WXQ8 436 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 CKAP5Q14008 2032 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 NUP205Q92621 2012 aa13.89□□□□□ -0.19
CLK3-216ENST00000564468 SYNJ2BP-COX16A0A087WUM0 186 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 GOLGA6L7A0A1B0GV03 622 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 KCNU1A8MYU2 1149 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 M0QYT0 321 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 CHRM1P11229 460 aaPredicted RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 MMP8P22894 467 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 SLC6A4P31645 630 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 NSFP46459 744 aaKnown RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 ATXN1P54253 815 aaKnown RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 NME3Q13232 169 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 GEN1Q17RS7 908 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 MS4A13Q5J8X5 152 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 BRMS1LQ5PSV4 323 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 ACBD5Q5T8D3 534 aaPredicted RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 EGFLAMQ63HQ2 1017 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 ANO7Q6IWH7 933 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 PPP1R2P3Q6NXS1 205 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 RFWD3Q6PCD5 774 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 LUZP1Q86V48 1076 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 CHSY1Q86X52 802 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 AHI1Q8N157 1196 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 GABRG3Q99928 467 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 RTKNQ9BST9 563 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 NUP58Q9BVL2 599 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 EDEM3Q9BZQ6 932 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
CLK3-216ENST00000564468 ELOVL2Q9NXB9 296 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms