RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ZNF202O95125 648 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 CAPNS1P04632 268 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 DLDP09622 509 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SETSIPP0DME0 302 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 C7P10643 843 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 PABPC1P11940 636 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 HLA-EP13747 358 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 POLR2EP19388 210 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 HOXD9P28356 352 aaPredicted RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 HLA-FP30511 346 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ACSL1P33121 698 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SLC11A2P49281 568 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 FKBP3Q00688 224 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 CUL2Q13617 745 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 KIF19Q2TAC6 998 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 GOLGA7BQ2TAP0 167 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 TTC31Q49AM3 519 aaPredicted RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ZCWPW2Q504Y3 356 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 TMPRSS7Q7RTY8 843 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 KIAA0907Q7Z7F0 614 aaPredicted RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ADIPOR2Q86V24 386 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 CCDC117Q8IWD4 279 aaPredicted RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SCML4Q8N228 414 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 GALNT15Q8N3T1 639 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 C1orf216Q8TAB5 229 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 KCTD13Q8WZ19 329 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 EDEM1Q92611 657 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SKA1Q96BD8 255 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 TSG101Q99816 390 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 DDX50Q9BQ39 737 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 IL21RQ9HBE5 538 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SGK2Q9HBY8 427 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ABCB8Q9NUT2 735 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 RMND1Q9NWS8 449 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SFMBT1Q9UHJ3 866 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 GGA2Q9UJY4 613 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 SCML1Q9UN30 329 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ANKRD6Q9Y2G4 727 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 FNDC3AQ9Y2H6 1198 aaKnown RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.56□□□□□ -0.88
HDDC3-204ENST00000559834 COQ4Q9Y3A0 265 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 CHD6Q8TD26 2715 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 TYW5A2RUC4 315 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 YJEFN3A6XGL0 299 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 E7ENQ6 273 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 SLC16A3O15427 465 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 TNFSF14O43557 240 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 RNASEH1O60930 286 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 SEMA4FO95754 770 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 TBXAS1P24557 533 aaPredicted RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 CD27P26842 260 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 GRIA4P48058 902 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 ST8SIA6P61647 398 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 BNC1Q01954 994 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 ADIGQ0VDE8 80 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 ACAP1Q15027 740 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 INAVAQ3KP66 663 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 DCAF17Q5H9S7 520 aaPredicted RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 NUGGCQ68CJ6 796 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 MBLAC2Q68D91 279 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 ZNF776Q68DI1 518 aaPredicted RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 ADAT2Q7Z6V5 191 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 CACUL1Q86Y37 369 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 UBA3Q8TBC4 463 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 GANCQ8TET4 914 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 CYB5D2Q8WUJ1 264 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 NDRG1Q92597 394 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 IGSF8Q969P0 613 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 AZIN2Q96A70 460 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 BIRC7Q96CA5 298 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 EEF2KMTQ96G04 330 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 GTPBP4Q9BZE4 634 aaKnown RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 C6orf106Q9H6K1 298 aaPredicted RBP9.55□□□□□ -0.88
HDDC3-204ENST00000559834 PRSS16Q9NQE7 514 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 GPSM3Q9Y4H4 160 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 SNX11Q9Y5W9 270 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 IGF2RP11717 2491 aa9.55□□□□□ -0.88
HDDC3-204ENST00000559834 KNL1Q8NG31 2342 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 GOLGA8CPA6NN73 597 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 TULP2O00295 520 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 PCDHGA12O60330 932 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 TBL1XO60907 577 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 FSBPO95073 299 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 PAEPP09466 180 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 ATXN1LP0C7T5 689 aaKnown RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 LCP1P13796 627 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 HOXB3P14651 431 aaPredicted RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 GRK6P43250 576 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CCT8P50990 548 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 C21orf59P57076 290 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 RPS14P62263 151 aaKnown RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CETN1Q12798 172 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 STILQ15468 1287 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CNGA2Q16280 664 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 PTPRNQ16849 979 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CBWD6Q4V339 395 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CBWD3Q5JTY5 395 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CBWD5Q5RIA9 395 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 PIK3R6Q5UE93 754 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms