RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 WBP2Q969T9 261 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 HHIPQ96QV1 700 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 ERGIC2Q96RQ1 377 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 NUP58Q9BVL2 599 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 WDCPQ9H6R7 721 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 SEPT11Q9NVA2 429 aaKnown RBP4.54□□□□□ -1.68
SNX1-205ENST00000559339 DDIT4Q9NX09 232 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.54□□□□□ -1.68
SNX1-205ENST00000559339 COX16Q9P0S2 106 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 CYTH4Q9UIA0 394 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 SMG5Q9UPR3 1016 aaKnown RBP4.54□□□□□ -1.68
SNX1-205ENST00000559339 SIK3Q9Y2K2 1263 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 RIF1Q5UIP0 2472 aaKnown RBP4.54□□□□□ -1.68
SNX1-205ENST00000559339 CACNA1IQ9P0X4 2223 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 VPS13AQ96RL7 3174 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 PTPRDP23468 1912 aa4.54□□□□□ -1.68
SNX1-205ENST00000559339 USP34Q70CQ2 3546 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 TICRRQ7Z2Z1 1910 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 A0A1W2PQC6 194 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 TCRBV21S2A2A0A5A6 115 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 PRRT4C9JH25 899 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 M0QYT0 321 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SGK1O00141 431 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 HRO43593 1189 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 TSPAN3O60637 253 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 LRP3O75074 770 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 DAB1O75553 588 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CALB1P05937 261 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 FYNP06241 537 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 EPHX1P07099 455 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 RETP07949 1114 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CISD3P0C7P0 127 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ACADMP11310 421 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 PABPC1P11940 636 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 KRT3P12035 628 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 HNRNPLP14866 589 aaKnown RBP eCLIP4.53□□□□□ -1.68
SNX1-205ENST00000559339 FERP16591 822 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 POLR2EP19388 210 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 SDHBP21912 280 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 MMP8P22894 467 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 HOXD9P28356 352 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 HLA-FP30511 346 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CDH5P33151 784 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 GABRB2P47870 512 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 UBASH3AP57075 661 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 JAM2P57087 298 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ST8SIA6P61647 398 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 DEUP1Q05D60 604 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 TAF5Q15542 800 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 LPAL2Q16609 132 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 GEN1Q17RS7 908 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ZSCAN23Q3MJ62 389 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ARL13BQ3SXY8 428 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SLC25A52Q3SY17 297 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ZC3H12AQ5D1E8 599 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 MS4A13Q5J8X5 152 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 BRMS1LQ5PSV4 323 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 EMC10Q5UCC4 262 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 RNF219Q5W0B1 726 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 EGFLAMQ63HQ2 1017 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 DPY19L2P1Q6NXN4 242 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 RFWD3Q6PCD5 774 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SERPINA13PQ6UXR4 307 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 LRRC31Q6UY01 552 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 FAM183BPQ6ZVS7 135 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CHST9Q7L1S5 443 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ARCQ7LC44 396 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 NOP9Q86U38 636 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 TAC4Q86UU9 113 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 LUZP1Q86V48 1076 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 VPS36Q86VN1 386 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 RASSF3Q86WH2 238 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CHSY1Q86X52 802 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 PHTF2Q8N3S3 785 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 CARNMT1Q8N4J0 409 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SUMF1Q8NBK3 374 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 MDGA1Q8NFP4 955 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 FIBINQ8TAL6 211 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 HMGB4Q8WW32 186 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 DDX1Q92499 740 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 EZH1Q92800 747 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 IQCDQ96DY2 449 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SLC39A13Q96H72 371 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 PIWIL1Q96J94 861 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 LOXL4Q96JB6 756 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 RPRD1AQ96P16 312 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 SLC2A13Q96QE2 648 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 SELENOOQ9BVL4 669 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 NUCKS1Q9H1E3 243 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 GANQ9H2C0 597 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ABCB8Q9NUT2 735 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 C2orf42Q9NWW7 574 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ELOVL2Q9NXB9 296 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 ADAM22Q9P0K1 906 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 KIAA1522Q9P206 1035 aaPredicted RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 STIM2Q9P246 746 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 GGA2Q9UJY4 613 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 NOCTQ9UK39 431 aaKnown RBP4.53□□□□□ -1.68
SNX1-205ENST00000559339 FBXO10Q9UK96 956 aa4.53□□□□□ -1.68
SNX1-205ENST00000559339 AJAP1Q9UKB5 411 aaPredicted RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms