RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 YAF2Q8IY57 180 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 RBPJLQ9UBG7 517 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 ST3GAL5Q9UNP4 418 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 F5H5T6 163 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 GBE1Q04446 702 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 TMC7Q7Z402 723 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 KCNMB4Q86W47 210 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 PPTC7Q8NI37 304 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 PHF21BQ96EK2 531 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 TELO2Q9Y4R8 837 aa16.7■□□□□ 0.26
CUX1-213ENST00000549414 TREHO43280 583 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 CYTH1Q15438 398 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 EML3Q32P44 896 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 PTRHD1Q6GMV3 140 aaKnown RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 PMF1Q6P1K2 205 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 FUKQ8N0W3 1084 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 STKLD1Q8NE28 680 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 PCDH18Q9HCL0 1135 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 HMX1Q9NP08 348 aaPredicted RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 FARP1Q9Y4F1 1045 aaPredicted RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 V9GYQ6 96 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 H0Y626 953 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 TCF4P15884 667 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 HMOX2P30519 316 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 PTGIRP43119 386 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 MMP13P45452 471 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 SCNN1BP51168 640 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 PLK1P53350 603 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 MAP2K5Q13163 448 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 SNX17Q15036 470 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 ILDR2Q71H61 639 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 DDX53Q86TM3 631 aaKnown RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 HSFY1Q96LI6 401 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 UTP6Q9NYH9 597 aaKnown RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 CBX4O00257 560 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 TPST1O60507 370 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 UBTFL6P0CB48 400 aaPredicted RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 UNGP13051 313 aaPredicted RBP16.69■□□□□ 0.26
CUX1-213ENST00000549414 CD52P31358 61 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 CDH17Q12864 832 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 MTFR1Q15390 333 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 SPDYAQ5MJ70 313 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 MARC1Q5VT66 337 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 ZNF470Q6ECI4 717 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 PGBD3Q8N328 593 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 SLC4A11Q8NBS3 891 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 GPAMQ9HCL2 828 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 STXBP5LQ9Y2K9 1186 aa16.69■□□□□ 0.26
CUX1-213ENST00000549414 A0A0A0MRY4 1105 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 SMIM28A0A1B0GU29 152 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 TCRBV9S1A1TA0A576 114 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 MEI4A8MW99 385 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 CYP1A1P04798 512 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 AKT1P31749 480 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 CDKN2BP42772 138 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SLC11A2P49281 568 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 PEX5P50542 639 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 MBTD1Q05BQ5 628 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 ZNF177Q13360 481 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 MAPRE2Q15555 327 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 CNGA3Q16281 694 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 RARS2Q5T160 578 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 C7orf43Q8WVR3 580 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SPATA13Q96N96 652 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 MRPL46Q9H2W6 279 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 GRHL1Q9NZI5 618 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 LSM7Q9UK45 103 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 FAF1Q9UNN5 650 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 BUD23O43709 281 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 ATP6V1G2O95670 118 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 ERCC2P18074 760 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 BRCC3P46736 316 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 KCNJ2P63252 427 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SATB1Q01826 763 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 RGMBQ6NW40 437 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 C12orf42Q96LP6 360 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 LPIN3Q9BQK8 851 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 MINDY3Q9H8M7 445 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 HMGXB4Q9UGU5 601 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 DSEQ9UL01 958 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 RPTORQ8N122 1335 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 NCAM2O15394 837 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SEC24DO94855 1032 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 CKMP06732 381 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 NRLP54845 237 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 TBX4P57082 545 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 CDH18Q13634 790 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SLC10A6Q3KNW5 377 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 ANKRD22Q5VYY1 191 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 ZNF280DQ6N043 979 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SUGP1Q8IWZ8 645 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 SPOCK2Q92563 424 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SENP6Q9GZR1 1112 aaPredicted RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 TXNRD2Q9NNW7 524 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 SPATS2LQ9NUQ6 558 aaKnown RBP16.68■□□□□ 0.26
CUX1-213ENST00000549414 ALOX15BO15296 676 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 CYBBP04839 570 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 MMP3P08254 477 aa16.68■□□□□ 0.26
CUX1-213ENST00000549414 KLC1Q07866 573 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms