RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CLDN5O00501 218 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 SMIM24O75264 130 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 STAU1O95793 577 aaKnown RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 CTSHP09668 335 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 IL4RP24394 825 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ALDH18A1P54886 795 aaKnown RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 MROH9Q5TGP6 573 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 RNF220Q5VTB9 566 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 FAM91A1Q658Y4 838 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ATG16L1Q676U5 607 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 TRMT10BQ6PF06 316 aaKnown RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 ALKAL1Q6UXT8 129 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ZCCHC23Q6ZST2 131 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 PAXIP1Q6ZW49 1069 aaPredicted RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 KBTBD2Q8IY47 623 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ARHGAP24Q8N264 748 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 PPFIBP2Q8ND30 876 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 CFAP61Q8NHU2 1237 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 DHX35Q9H5Z1 703 aaKnown RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 KRT82Q9NSB4 513 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ZNF180Q9UJW8 692 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 IPPQ9Y573 584 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 DCAF8L1A6NGE4 600 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ZBED1O96006 694 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 C6orf222P0C671 652 aaPredicted RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 PRKCHP24723 683 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 AFF1P51825 1210 aaKnown RBP12.91□□□□□ -0.34
RNF4-222ENST00000541204 RAP1GDS1P52306 607 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 HDAC4P56524 1084 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 BCAR1P56945 870 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 FKBP1BP68106 108 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 TEX44Q53QW1 395 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 UNC5AQ6ZN44 842 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 APPL2Q8NEU8 664 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 FAM149B1Q96BN6 582 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 SLC4A5Q9BY07 1137 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 PPP1R12CQ9BZL4 782 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 KLC2Q9H0B6 622 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 SIRPGQ9P1W8 387 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 ZNF212Q9UDV6 495 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 MAD1L1Q9Y6D9 718 aa12.91□□□□□ -0.34
RNF4-222ENST00000541204 C17orf102A2RUQ5 167 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 MAP3K7O43318 606 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 APOEP02649 317 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TKTP29401 623 aaKnown RBP12.9□□□□□ -0.34
RNF4-222ENST00000541204 IRX4P78413 519 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 UBXN11Q5T124 520 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 LGSNQ5TDP6 509 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TMEM110Q86TL2 294 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 MAP7D3Q8IWC1 876 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 SCUBE1Q8IWY4 988 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 NDUFAF2Q8N183 169 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 MPP5Q8N3R9 675 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TTC39CQ8N584 583 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PQLC3Q8N755 202 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 LRRC52Q8N7C0 313 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PCDH19Q8TAB3 1148 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 RILPQ96NA2 401 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TSC22D3Q99576 134 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 THTPAQ9BU02 230 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 WWP1Q9H0M0 922 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 VCXQ9H320 206 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PIDD1Q9HB75 910 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PCDH18Q9HCL0 1135 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 DERAQ9Y315 318 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 HMX2A2RU54 273 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 UNCXA6NJT0 531 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TRDMT1O14717 391 aaKnown RBP12.9□□□□□ -0.34
RNF4-222ENST00000541204 APOL1O14791 398 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 MAGEC1O60732 1142 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 CPT1AP50416 773 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 STILQ15468 1287 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 FSCN1Q16658 493 aaKnown RBP12.9□□□□□ -0.34
RNF4-222ENST00000541204 CRLF3Q8IUI8 442 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TRIM42Q8IWZ5 723 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PYROXD2Q8N2H3 581 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PHC3Q8NDX5 983 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TEKT4Q8WW24 435 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PANX3Q96QZ0 392 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 EBF4Q9BQW3 602 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TMPRSS4Q9NRS4 437 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 PLA2G4CQ9UP65 541 aa12.9□□□□□ -0.34
RNF4-222ENST00000541204 TIMM13Q9Y5L4 95 aaPredicted RBP12.9□□□□□ -0.34
RNF4-222ENST00000541204 PRR5-ARHGAP8B1AHC4 643 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 PIRO00625 290 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 HUS1O60921 280 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 KRT38O76015 456 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 CCNFP41002 786 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ARHGAP8P85298 464 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 UBAP2LQ14157 1087 aaKnown RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 ZRSR2Q15696 482 aaKnown RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 OR52E8Q6IFG1 317 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 RIPOR1Q6ZS17 1223 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ULK2Q8IYT8 1036 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ADGRF2Q8IZF7 708 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 CCDC185Q8N715 623 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 SMG8Q8ND04 991 aaKnown RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 RTP4Q96DX8 246 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ZNF184Q99676 751 aaPredicted RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 TAGLN3Q9UI15 199 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms