RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ARHGAP18Q8N392 663 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 FNIP1Q8TF40 1166 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 RFFLQ8WZ73 363 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 OVCA2Q8WZ82 227 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 CCDC74AQ96AQ1 378 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 TRMT2BQ96GJ1 504 aaKnown RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 ZNF512Q96ME7 567 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 NECAB3Q96P71 396 aaPredicted RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 C11orf70Q9BRQ4 267 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 SELENOOQ9BVL4 669 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 TTLL2Q9BWV7 592 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 PACSIN1Q9BY11 444 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 RASSF4Q9H2L5 321 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 ABCC13Q9NSE7 274 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 DZANK1Q9NVP4 752 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 TRMT1Q9NXH9 659 aaKnown RBP7.74□□□□□ -1.17
CD44-228ENST00000528455 RRN3Q9NYV6 651 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 TMEM59LQ9UK28 342 aa7.74□□□□□ -1.17
CD44-228ENST00000528455 SLC38A8A6NNN8 435 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 LILRB5O75023 590 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ENDOD1O94919 500 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 POU2F2P09086 479 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 USP17L7P0C7H9 530 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SPATA31D3P0C874 917 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 PTPN2P17706 415 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 CA8P35219 290 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 RFC1P35251 1148 aaPredicted RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 LTBRP36941 435 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SLC1A1P43005 524 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 NOP2P46087 812 aaKnown RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 DAOAP59103 153 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ADIGQ0VDE8 80 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ADAM15Q13444 863 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 KCNC3Q14003 757 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 PIGHQ14442 188 aaPredicted RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 VEPH1Q14D04 833 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 DUSP6Q16828 381 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 DNAJC24Q6P3W2 148 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 DCUN1D2Q6PH85 259 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 OLFML1Q6UWY5 402 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SPATA31D4Q6ZUB0 917 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SLFN11Q7Z7L1 901 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 RBM23Q86U06 439 aaKnown RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 DNAAF5Q86Y56 855 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 PDZD8Q8NEN9 1154 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 TRIM58Q8NG06 486 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SCAMP5Q8TAC9 235 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 NT5C3BQ969T7 300 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 PSMG2Q969U7 264 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ZNF653Q96CK0 615 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ARHGEF26Q96DR7 871 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 SEPT5Q99719 369 aaPredicted RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 NUP85Q9BW27 656 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 RHOBTB2Q9BYZ6 727 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 ULBP1Q9BZM6 244 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 POPDC2Q9HBU9 364 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 LZTFL1Q9NQ48 299 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 TLR8Q9NR97 1041 aaKnown RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 ZDHHC7Q9NXF8 308 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 CLIC5Q9NZA1 410 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 CTTNBP2NLQ9P2B4 639 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 UXTQ9UBK9 157 aaPredicted RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 CHORDC1Q9UHD1 332 aaPredicted RBP7.73□□□□□ -1.17
CD44-228ENST00000528455 IP6K2Q9UHH9 426 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 FBXW11Q9UKB1 542 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 GUCA1BQ9UMX6 200 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 INSL5Q9Y5Q6 135 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 NCANO14594 1321 aa7.73□□□□□ -1.17
CD44-228ENST00000528455 PLXNA3P51805 1871 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 A0A1W2PP55 124 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 C2CD4BA6NLJ0 364 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 YJEFN3A6XGL0 299 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 E7ENQ6 273 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PER2O15055 1255 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 KIF5CO60282 957 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ZNF500O60304 480 aaPredicted RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 HSF2BPO75031 334 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 FGF19O95750 216 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 F9P00740 461 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 LRG1P02750 347 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 LTFP02788 710 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 C8AP07357 584 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ZDHHC11BP0C7U3 371 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 IL9P15248 144 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PDGFRAP16234 1089 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 HMGA1P17096 107 aaKnown RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 DESP17661 470 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 PFKLP17858 780 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ATF6P18850 670 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 GTF2F1P35269 517 aaKnown RBP eCLIP7.72□□□□□ -1.17
CD44-228ENST00000528455 MATKP42679 507 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 NRIP1P48552 1158 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 CDR1P51861 262 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 ZNF143P52747 638 aaPredicted RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 SLC5A3P53794 718 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 NAP1L1P55209 391 aaKnown RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 RPL7AP62424 266 aaKnown RBP7.72□□□□□ -1.17
CD44-228ENST00000528455 TWF1Q12792 350 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 TAF12Q16514 161 aa7.72□□□□□ -1.17
CD44-228ENST00000528455 C2CD6Q53TS8 623 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms