RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MIS12Q9H081 205 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 NMUR1Q9HB89 426 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 SPHK2Q9NRA0 654 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 CLIC5Q9NZA1 410 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 DEC1Q9P2X7 70 aa10.58□□□□□ -0.72
VPS28-204ENST00000526054 ATXN2Q99700 1313 aaKnown RBP10.58□□□□□ -0.72
VPS28-204ENST00000526054 MYO18AQ92614 2054 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 A0A0A0MRY4 1105 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 E5RJQ4 531 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 NEDD8-MDP1E9PL57 170 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 PIK3R2O00459 728 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 GIPC1O14908 333 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 MMEP08473 750 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 HOXB2P14652 356 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 ATP5C1P36542 298 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 PTGER3P43115 390 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 ZBED6P86452 979 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 FMO1Q01740 532 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 LMAN2Q12907 356 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 BYSLQ13895 437 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 TRIM61Q5EBN2 209 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 C10orf120Q5SQS8 335 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 LYSMD4Q5XG99 296 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 GRAMD4Q6IC98 578 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 KLHDC10Q6PID8 442 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 SCD5Q86SK9 330 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 TMEM110Q86TL2 294 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 GAS2L3Q86XJ1 694 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 VSTM4Q8IW00 320 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 TMEFF1Q8IYR6 380 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 ZNF276Q8N554 614 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 FRMD1Q8N878 549 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 SLC20A1Q8WUM9 679 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 WBP2Q969T9 261 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 CPXM1Q96SM3 734 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 NUSAP1Q9BXS6 441 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 OLA1Q9NTK5 396 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 SEPT11Q9NVA2 429 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 DNAJC17Q9NVM6 304 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.57□□□□□ -0.721e-6■■□□□ 14.1
VPS28-204ENST00000526054 EVLQ9UI08 416 aaPredicted RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 CYTH4Q9UIA0 394 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 LSM7Q9UK45 103 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 STRIP2Q9ULQ0 834 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 CAPN11Q9UMQ6 739 aa10.57□□□□□ -0.72
VPS28-204ENST00000526054 LUC7L2Q9Y383 392 aaKnown RBP10.57□□□□□ -0.72
VPS28-204ENST00000526054 YJEFN3A6XGL0 299 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 E7ENQ6 273 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 CDX4O14627 284 aaPredicted RBP10.56□□□□□ -0.72
VPS28-204ENST00000526054 LTFP02788 710 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 GYPCP04921 128 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 DPP6P42658 865 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 MAPK8P45983 427 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 PGFP49763 221 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 NOMO3P69849 1222 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 IRX4P78413 519 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 KLHL30Q0D2K2 578 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 FOXC1Q12948 553 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 MAP7D1Q3KQU3 841 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 UAP1L1Q3KQV9 507 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 PTPN20Q4JDL3 420 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 NAA35Q5VZE5 725 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 BSPRYQ5W0U4 402 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 PPP1R2P3Q6NXS1 205 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 TOGARAM2Q6ZUX3 1019 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 BHLHA9Q7RTU4 235 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 ERICH1Q86X53 443 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 TMEM25Q86YD3 366 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 ZDHHC17Q8IUH5 632 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 SYT12Q8IV01 421 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 WDTC1Q8N5D0 677 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 KCNV2Q8TDN2 545 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 RNF139Q8WU17 664 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 CPLX3Q8WVH0 158 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 NDRG1Q92597 394 aaKnown RBP10.56□□□□□ -0.72
VPS28-204ENST00000526054 SYN2Q92777 582 aaPredicted RBP10.56□□□□□ -0.72
VPS28-204ENST00000526054 FAM149B1Q96BN6 582 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 AGPAT1Q99943 283 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 BBS2Q9BXC9 721 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 ABCC13Q9NSE7 274 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 OSER1Q9NX31 292 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 AIPL1Q9NZN9 384 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 CALCOCO1Q9P1Z2 691 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 MBD1Q9UIS9 605 aaPredicted RBP10.56□□□□□ -0.72
VPS28-204ENST00000526054 RASAL2Q9UJF2 1139 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 DNMT3LQ9UJW3 386 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 CHD6Q8TD26 2715 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 GON4LQ3T8J9 2241 aa10.56□□□□□ -0.72
VPS28-204ENST00000526054 ADAMTS9Q9P2N4 1935 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 TRIM24O15164 1050 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 ZBTB24O43167 697 aaPredicted RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 PAPSS1O43252 624 aaPredicted RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 AP5Z1O43299 807 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CACNG3O60359 315 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 GABBR2O75899 941 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 TBX18O95935 607 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 ERBB2P04626 1255 aa10.55□□□□□ -0.72
VPS28-204ENST00000526054 CYP1A1P04798 512 aaPredicted RBP10.55□□□□□ -0.72
VPS28-204ENST00000526054 CFIP05156 583 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms