RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RALAP11233 206 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 ADH5P11766 374 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 RARGP13631 454 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 BMP6P22004 513 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 SLC6A11P48066 632 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 FMO5P49326 533 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 PGFP49763 221 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 COG7P83436 770 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 LMNB2Q03252 620 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 CUL2Q13617 745 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 PUM1Q14671 1186 aaKnown RBP eCLIP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 CSRP2Q16527 193 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 CAMK4Q16566 473 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 WHAMMP3Q1A5X7 153 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 ZNF394Q53GI3 561 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 DCAF17Q5H9S7 520 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 RAB41Q5JT25 222 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 LY6G5CQ5SRR4 150 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 BTBD8Q5XKL5 378 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 NAIF1Q69YI7 327 aaPredicted RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 HEATR6Q6AI08 1181 aaKnown RBP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 PM20D1Q6GTS8 502 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 TTI2Q6NXR4 508 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 PRR23BQ6ZRT6 265 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 MICALCLQ6ZW33 695 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 B4GALNT4Q76KP1 1039 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 GPRIN1Q7Z2K8 1008 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 CACNA2D4Q7Z3S7 1137 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 TAX1BP1Q86VP1 789 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 ARHGAP18Q8N392 663 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 TRIML1Q8N9V2 468 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 RPLP0P6Q8NHW5 317 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 NMUR1Q9HB89 426 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 SPHK2Q9NRA0 654 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.4□□□□□ -1.06
SCN1A-207ENST00000507401 WDR35Q9P2L0 1181 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 DEC1Q9P2X7 70 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 DNMT3LQ9UJW3 386 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 GGA2Q9UJY4 613 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 ZNF510Q9Y2H8 683 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 STARD13Q9Y3M8 1113 aa8.4□□□□□ -1.06
SCN1A-207ENST00000507401 A0A1W2PQH9 124 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 CYP26A1O43174 497 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 FGFR1OPO95684 399 aaKnown RBP8.39□□□□□ -1.07
SCN1A-207ENST00000507401 PAEPP09466 180 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 VDRP11473 427 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 DGKEP52429 567 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 MARSP56192 900 aaKnown RBP8.39□□□□□ -1.07
SCN1A-207ENST00000507401 DMC1Q14565 340 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 CRY1Q16526 586 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 SGO2Q562F6 1265 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 C2orf27AQ580R0 203 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 ISM2Q6H9L7 571 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 WDR93Q6P2C0 686 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 TRIM65Q6PJ69 517 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 CEP68Q76N32 757 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 SCD5Q86SK9 330 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 PIGZQ86VD9 579 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 C11orf74Q86VG3 221 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 TMEM25Q86YD3 366 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 FMNL3Q8IVF7 1028 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 BBS7Q8IWZ6 715 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 ETFBKMTQ8IXQ9 262 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 PHTF2Q8N3S3 785 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 UBR7Q8N806 425 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 NELFBQ8WX92 580 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 KCTD13Q8WZ19 329 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 JAKMIP2Q96AA8 810 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 RMDN1Q96DB5 314 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 DCLK3Q9C098 648 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 ARHGEF4Q9NR80 690 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 OSER1Q9NX31 292 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 TRMT1Q9NXH9 659 aaKnown RBP8.39□□□□□ -1.07
SCN1A-207ENST00000507401 MARK1Q9P0L2 795 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 NAGPAQ9UK23 515 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 LSM7Q9UK45 103 aaKnown RBP8.39□□□□□ -1.07
SCN1A-207ENST00000507401 MMP17Q9ULZ9 603 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 MYOFQ9NZM1 2061 aa8.39□□□□□ -1.07
SCN1A-207ENST00000507401 DMXL1Q9Y485 3027 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TBC1D3BA6NDS4 549 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 H3BM21 787 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 EBAG9O00559 213 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 PPP1R12AO14974 1030 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 XPO1O14980 1071 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 SHOX2O60902 331 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 TULP3O75386 442 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 ALDH1A2O94788 518 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 ZBED1O96006 694 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CHKAP35790 457 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 ARHGAP25P42331 645 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 KIR2DL1P43626 348 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 PXNP49023 591 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 GCNT1Q02742 428 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 SPEM2Q0P670 501 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CBLBQ13191 982 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 SRSF5Q13243 272 aaKnown RBP8.38□□□□□ -1.07
SCN1A-207ENST00000507401 STILQ15468 1287 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CNGA2Q16280 664 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 ANO4Q32M45 955 aa8.38□□□□□ -1.07
SCN1A-207ENST00000507401 CCDC40Q4G0X9 1142 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms