RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ATG16L1Q676U5 607 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 MARK2Q7KZI7 788 aaKnown RBP10.16□□□□□ -0.78
CLIP1-204ENST00000501271 TRIM42Q8IWZ5 723 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 TP53INP2Q8IXH6 220 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 B3GALNT2Q8NCR0 500 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ARRDC4Q8NCT1 418 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 STKLD1Q8NE28 680 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 RNF139Q8WU17 664 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ARNTL2Q8WYA1 636 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 P2RY11Q96G91 374 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 ZNF408Q9H9D4 720 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 KCNK4Q9NYG8 393 aa10.16□□□□□ -0.78
CLIP1-204ENST00000501271 GYG2O15488 501 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 SNNO75324 88 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 GSRP00390 522 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 ALDOAP04075 364 aaKnown RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 KCNE1P15382 129 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 IGFBP6P24592 240 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 MGAT1P26572 445 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 PSMB4P28070 264 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 FDFT1P37268 417 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 CPA2P48052 419 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 NDUFV1P49821 464 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 IRX4P78413 519 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 SNX17Q15036 470 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 KHDC1Q4VXA5 237 aaKnown RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 XKR4Q5GH76 650 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 PRAMEF19Q5SWL8 479 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 FAM91A1Q658Y4 838 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 IQSEC1Q6DN90 963 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 LRRC8BQ6P9F7 803 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 TIFABQ6ZNK6 161 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 TREML1Q86YW5 311 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 MAB21L3Q8N8X9 362 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 TUBB6Q9BUF5 446 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 TAS2R1Q9NYW7 299 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 IL1RAPL1Q9NZN1 696 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 RCOR3Q9P2K3 495 aaPredicted RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 RPL26L1Q9UNX3 145 aaKnown RBP10.15□□□□□ -0.78
CLIP1-204ENST00000501271 PSAT1Q9Y617 370 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 SHROOM3Q8TF72 1996 aa10.15□□□□□ -0.78
CLIP1-204ENST00000501271 TPP1O14773 563 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 CREB3O43889 395 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 HUS1O60921 280 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 ESRRAP11474 423 aaPredicted RBP10.15□□□□□ -0.79
CLIP1-204ENST00000501271 MLNP12872 115 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 CDC25CP30307 473 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 PNPLA4P41247 253 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 RABGGTBP53611 331 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 LILRA4P59901 499 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SARNPP82979 210 aaKnown RBP10.15□□□□□ -0.79
CLIP1-204ENST00000501271 CDC42EP1Q00587 391 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 OLIG2Q13516 323 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 CRYMQ14894 314 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 NAA25Q14CX7 972 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SV2CQ496J9 727 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SYPL2Q5VXT5 272 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 BSPRYQ5W0U4 402 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 C16orf46Q6P387 395 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 PACS1Q6VY07 963 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 HFE2Q6ZVN8 426 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 PAQR9Q6ZVX9 377 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 CYS1Q717R9 158 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 BNIPLQ7Z465 357 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 RNF169Q8NCN4 708 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 FBXO41Q8TF61 875 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 NT5C3BQ969T7 300 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 PGLYRP2Q96PD5 576 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 NPY6RQ99463 290 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 DUSP16Q9BY84 665 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SYBUQ9NX95 663 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SEPT10Q9P0V9 454 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 EMCNQ9ULC0 261 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SLC45A1Q9Y2W3 748 aa10.15□□□□□ -0.79
CLIP1-204ENST00000501271 HBS1LQ9Y450 684 aaKnown RBP10.15□□□□□ -0.79
CLIP1-204ENST00000501271 SDR42E2A6NKP2 422 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 CAPN14A8MX76 684 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 M0QYT0 321 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 BIRC5O15392 142 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 TREHO43280 583 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 OPHN1O60890 802 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 RARBP10826 455 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 YBX3P16989 372 aaKnown RBP eCLIP10.14□□□□□ -0.79
CLIP1-204ENST00000501271 NPR3P17342 541 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 PTDSS1P48651 473 aaKnown RBP10.14□□□□□ -0.79
CLIP1-204ENST00000501271 GLUD2P49448 558 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 AQP5P55064 265 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 SLC8A3P57103 927 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 WASHC5Q12768 1159 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 NME3Q13232 169 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 MFSD10Q14728 455 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 PCBP1Q15365 356 aaKnown RBP eCLIP10.14□□□□□ -0.79
CLIP1-204ENST00000501271 MDH1BQ5I0G3 518 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 BZW1Q7L1Q6 419 aaKnown RBP10.14□□□□□ -0.79
CLIP1-204ENST00000501271 HACE1Q8IYU2 909 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 ZNF567Q8N184 647 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 SMG8Q8ND04 991 aaKnown RBP10.14□□□□□ -0.79
CLIP1-204ENST00000501271 FBXO27Q8NI29 283 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 RAB3IL1Q8TBN0 382 aa10.14□□□□□ -0.79
CLIP1-204ENST00000501271 SH3TC2Q8TF17 1288 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms