RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CDKL2Q92772 493 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ABTB1Q969K4 478 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 MCRS1Q96EZ8 462 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 VPS50Q96JG6 964 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 MMP19Q99542 508 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TRIM56Q9BRZ2 755 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CDH19Q9H159 772 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 GABBR1Q9UBS5 961 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 APPL1Q9UKG1 709 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ITGB1BP2Q9UKP3 347 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PCDHGB4Q9UN71 923 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PCDHGB5Q9Y5G0 923 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 WDR81Q562E7 1941 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 LOC100653049A0A140TA62 436 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 H3BSA7 217 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 WDR46O15213 610 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 GCATO75600 419 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 KRT34O76011 436 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PRKCGP05129 697 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PSAPP07602 524 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 RALBP11234 206 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 MLNP12872 115 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PORP16435 677 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CAP2P40123 477 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF143P52747 638 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CDH6P55285 790 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 COG7P83436 770 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 C16orf46Q6P387 395 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 IYDQ6PHW0 289 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CYP4V2Q6ZWL3 525 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PATL1Q86TB9 770 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CDKL3Q8IVW4 592 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 CPSF7Q8N684 471 aaKnown RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PLD5Q8N7P1 536 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TMEM102Q8N9M5 508 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-230ENST00000495090 HM13Q8TCT9 377 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ISL2Q96A47 359 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 GPRASP2Q96D09 838 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF597Q96LX8 424 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PDCD2LQ9BRP1 358 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 OSBPL11Q9BXB4 747 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 VPS33BQ9H267 617 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 TMEM134Q9H6X4 195 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 PCSK1NQ9UHG2 260 aa9.95□□□□□ -0.82
SYNE1-230ENST00000495090 UBR3Q6ZT12 1888 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 POLRMTO00411 1230 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TPP1O14773 563 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 APOL1O14791 398 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CAPN15O75808 1086 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 H6PDO95479 791 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TOP3BO95985 862 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CST3P01034 146 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 RBL1P28749 1068 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ARRB2P32121 409 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 THOP1P52888 689 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 MRPS22P82650 360 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CDKL1Q00532 357 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PLOD1Q02809 727 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 MMRN1Q13201 1228 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 MTA1Q13330 715 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PDAP1Q13442 181 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SURF1Q15526 300 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TAF5Q15542 800 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 FAM98CQ17RN3 349 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SLC44A4Q53GD3 710 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ZBTB41Q5SVQ8 909 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 C6orf52Q5T4I8 152 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SLC9A4Q6AI14 798 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 RWDD4Q6NW29 188 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 LRRC8BQ6P9F7 803 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ATG14Q6ZNE5 492 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 DSELQ8IZU8 1212 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 LILRA2Q8N149 483 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PRPF31Q8WWY3 499 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 LENG8Q96PV6 779 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PEBP4Q96S96 227 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CCT7Q99832 543 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 FERMT1Q9BQL6 677 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CNPY3Q9BT09 278 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 NUF2Q9BZD4 464 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 OSBPL6Q9BZF3 934 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SHCBP1LQ9BZQ2 653 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 COG4Q9H9E3 785 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 XPNPEP3Q9NQH7 507 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 VPS45Q9NRW7 570 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 FBXO28Q9NVF7 368 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TUBA8Q9NY65 449 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 IGSF9Q9P2J2 1179 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CYTH4Q9UIA0 394 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 FAF1Q9UNN5 650 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 KANSL1LA0AUZ9 987 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TRIM64CA6NLI5 447 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 FAM155AB1AL88 458 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 K7ERI5 159 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TADA2AO75478 443 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 BMP10O95393 424 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ERBB2P04626 1255 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF26P17031 533 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms