RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OPHN1O60890 802 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NDUFS2O75306 463 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CAPNS1P04632 268 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SYPP08247 313 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CD19P15391 556 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SPINK2P20155 84 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MAOBP27338 520 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SGSHP51688 502 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MARSP56192 900 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BNC1Q01954 994 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GCNT1Q02742 428 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FOXC1Q12948 553 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 WDR45BQ5MNZ6 344 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SYCP2LQ5T4T6 812 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PIK3R6Q5UE93 754 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TMEM270Q6UE05 265 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KIAA1324Q6UXG2 1013 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 UNQ6494/PRO21346Q6UXR6 183 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 DBX2Q6ZNG2 339 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 EHBP1Q8NDI1 1231 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 WFDC5Q8TCV5 224 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 IPO9Q96P70 1041 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NUP58Q9BVL2 599 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GPR174Q9BXC1 333 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ADAM33Q9BZ11 813 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SUSD2Q9UGT4 822 aa12.77□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KNTC1P50748 2209 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZFYVE26Q68DK2 2539 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 A0A1B0GTW7 788 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SPAARA0A1B0GVQ0 90 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 C10orf142B7Z368 130 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PSMA7O14818 248 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SYNCRIPO60506 623 aaKnown RBP12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TSPAN3O60637 253 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CBFA2T3O75081 653 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HLA-EP13747 358 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 LCP1P13796 627 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLC6A4P31645 630 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PPP1R2P41236 205 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GPD2P43304 727 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NUCB2P80303 420 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HNRNPDQ14103 355 aaKnown RBP12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MORC3Q14149 939 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 STILQ15468 1287 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PLEKHG6Q3KR16 790 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TRIM59Q8IWR1 403 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RGL4Q8IZJ4 473 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SIX6OS1Q8N1H7 587 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HDDC3Q8N4P3 179 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 OR2T3Q8NH03 318 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 WFIKKN2Q8TEU8 576 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CLEC4CQ8WTT0 213 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RNF139Q8WU17 664 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PRCCQ92733 491 aaPredicted RBP12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MYO19Q96H55 970 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SLC39A13Q96H72 371 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KREMEN1Q96MU8 473 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NT5C1BQ96P26 610 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GTPBP2Q9BX10 602 aaKnown RBP12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZDHHC5Q9C0B5 715 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PCED1AQ9H1Q7 454 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MSRB2Q9Y3D2 182 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NEUROG3Q9Y4Z2 214 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PCDHB4Q9Y5E5 795 aa12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ANKRD11Q6UB99 2663 aaPredicted RBP12.76□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GOLGA6L7A0A1B0GV03 622 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GOLGA6L4A6NEF3 574 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 IRAK2O43187 625 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ACSL4O60488 711 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CALCAP01258 141 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 LTFP02788 710 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 EPHX1P07099 455 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ZNF883P0CG24 379 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PABPC1P11940 636 aaKnown RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GNSP15586 552 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PTPRBP23467 1997 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BRD2P25440 801 aaKnown RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RGS7P49802 495 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ATXN3P54252 364 aaPredicted RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SIM1P81133 766 aaPredicted RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KCNH2Q12809 1159 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 GRIK2Q13002 908 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NNTQ13423 1086 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 EIF4EBP2Q13542 120 aaPredicted RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BECN1Q14457 450 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MEA1Q16626 185 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ISM2Q6H9L7 571 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NADSYN1Q6IA69 706 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SERPINA13PQ6UXR4 307 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CHST9Q7L1S5 443 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 BEND5Q7L4P6 421 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 RAB44Q7Z6P3 723 aaPredicted RBP12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 ARHGEF19Q8IW93 802 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 UNC45BQ8IWX7 931 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PPM1KQ8N3J5 372 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FIBINQ8TAL6 211 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CYB5D2Q8WUJ1 264 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 TTC17Q96AE7 1141 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 MYEOVQ96EZ4 313 aa12.75□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FCRL2Q96LA5 508 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms