RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 NT5C1BQ96P26 610 aa14.12□□□□□ -0.15
CHD3-209ENST00000473376 DDX50Q9BQ39 737 aaKnown RBP14.12□□□□□ -0.15
CHD3-209ENST00000473376 KIAA1522Q9P206 1035 aaPredicted RBP14.12□□□□□ -0.15
CHD3-209ENST00000473376 SCML1Q9UN30 329 aa14.12□□□□□ -0.15
CHD3-209ENST00000473376 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.12□□□□□ -0.15
CHD3-209ENST00000473376 CHD6Q8TD26 2715 aa14.12□□□□□ -0.15
CHD3-209ENST00000473376 MEI4A8MW99 385 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 C1QTNF9BB2RNN3 333 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 KCNJ18B7U540 433 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 BCAT2O15382 392 aaPredicted RBP14.11□□□□□ -0.15
CHD3-209ENST00000473376 CER1O95813 267 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 GNA14O95837 355 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 EPHX1P07099 455 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 HMBSP08397 361 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 DLDP09622 509 aaKnown RBP14.11□□□□□ -0.15
CHD3-209ENST00000473376 C1QTNF9P0C862 333 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 CD19P15391 556 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 SFSWAPQ12872 951 aaKnown RBP14.11□□□□□ -0.15
CHD3-209ENST00000473376 RAB44Q7Z6P3 723 aaPredicted RBP14.11□□□□□ -0.15
CHD3-209ENST00000473376 ADIPOR2Q86V24 386 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 DEFB119Q8N690 84 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 C1orf216Q8TAB5 229 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 STK32AQ8WU08 396 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 ADAMTS14Q8WXS8 1223 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 GPR174Q9BXC1 333 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 CIPCQ9C0C6 399 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 SUN2Q9UH99 717 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 ZMIZ1Q9ULJ6 1067 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 TPX2Q9ULW0 747 aaKnown RBP14.11□□□□□ -0.15
CHD3-209ENST00000473376 CLEC4EQ9ULY5 219 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 CNTN6Q9UQ52 1028 aa14.11□□□□□ -0.15
CHD3-209ENST00000473376 BICDL2A1A5D9 508 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 TULP2O00295 520 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 PABPC1P11940 636 aaKnown RBP14.1□□□□□ -0.15
CHD3-209ENST00000473376 PRKCHP24723 683 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 PMS1P54277 932 aaKnown RBP14.1□□□□□ -0.15
CHD3-209ENST00000473376 MARSP56192 900 aaKnown RBP14.1□□□□□ -0.15
CHD3-209ENST00000473376 GRIK2Q13002 908 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 TRIP6Q15654 476 aaKnown RBP14.1□□□□□ -0.15
CHD3-209ENST00000473376 PIK3R6Q5UE93 754 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 TMEM270Q6UE05 265 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 USP30Q70CQ3 517 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 FIBINQ8TAL6 211 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 LMO3Q8TAP4 145 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 FAM81BQ96LP2 452 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 SLC6A17Q9H1V8 727 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 SFMBT1Q9UHJ3 866 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 GGA2Q9UJY4 613 aa14.1□□□□□ -0.15
CHD3-209ENST00000473376 DFNA5O60443 496 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 CBFA2T3O75081 653 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 LTFP02788 710 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 ASLP04424 464 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 ACADSBP45954 432 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 AFF3P51826 1226 aaKnown RBP14.09□□□□□ -0.15
CHD3-209ENST00000473376 MTA1Q13330 715 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 PTPRNQ16849 979 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 DCAF12L1Q5VU92 463 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 PMF1Q6P1K2 205 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 CHST9Q7L1S5 443 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 NAXDQ8IW45 347 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 UBA3Q8TBC4 463 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 TFAP2BQ92481 460 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 TTC17Q96AE7 1141 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 LHX5Q9H2C1 402 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 SGK2Q9HBY8 427 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 GDPD2Q9HCC8 539 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 APOBEC2Q9Y235 224 aaKnown RBP14.09□□□□□ -0.15
CHD3-209ENST00000473376 TLR6Q9Y2C9 796 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 PCDHB9Q9Y5E1 797 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 CEP192Q8TEP8 1941 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 FRYQ5TBA9 3013 aa14.09□□□□□ -0.15
CHD3-209ENST00000473376 CKAP5Q14008 2032 aa14.08□□□□□ -0.15
CHD3-209ENST00000473376 SPAARA0A1B0GVQ0 90 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 TYW5A2RUC4 315 aaKnown RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 FLRT2O43155 660 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 HYAL3O43820 417 aaPredicted RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 ACSL4O60488 711 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 PRKCSHP14314 528 aaPredicted RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 MATKP42679 507 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 BECN1Q14457 450 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 SUZ12Q15022 739 aaKnown RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 TTC31Q49AM3 519 aaPredicted RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 FAM133BQ5BKY9 247 aaKnown RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 MBLAC2Q68D91 279 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 TTI2Q6NXR4 508 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 ENOSF1Q7L5Y1 443 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 PPM1KQ8N3J5 372 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 HJURPQ8NCD3 748 aaPredicted RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 NDRG1Q92597 394 aaKnown RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 EDEM1Q92611 657 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 LMLNQ96KR4 655 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 SERPINB11Q96P15 392 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 CDC6Q99741 560 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 BTBD1Q9H0C5 482 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 CD93Q9NPY3 652 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 ABCB8Q9NUT2 735 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.08□□□□□ -0.16
CHD3-209ENST00000473376 PCDHB4Q9Y5E5 795 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 CFAP47Q6ZTR5 3102 aa14.08□□□□□ -0.16
CHD3-209ENST00000473376 TRIM49BA6NDI0 452 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms