RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NPY5RQ15761 445 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 PLA1AQ53H76 456 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.67□□□□□ -1.66
VPS29-202ENST00000447578 PLAC9Q5JTB6 97 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 FAXCQ5TGI0 409 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 VPS53Q5VIR6 699 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 LIN54Q6MZP7 749 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 CFAP161Q6P656 301 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 C1orf122Q6ZSJ8 110 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 ZNF551Q7Z340 670 aaPredicted RBP4.67□□□□□ -1.66
VPS29-202ENST00000447578 LRRTM4Q86VH4 590 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 TMTC1Q8IUR5 882 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 CCDC28AQ8IWP9 274 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 PDILTQ8N807 584 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 AFG1LQ8WV93 481 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 RILPL2Q969X0 211 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 TAF1DQ9H5J8 278 aaPredicted RBP4.67□□□□□ -1.66
VPS29-202ENST00000447578 UBN1Q9NPG3 1134 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 NRIP3Q9NQ35 241 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 ARHGEF3Q9NR81 526 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 RASSF1Q9NS23 344 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 DKK4Q9UBT3 224 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 NRBP1Q9UHY1 535 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 CAPN11Q9UMQ6 739 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 TMEM98Q9Y2Y6 226 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 RPS6KL1Q9Y6S9 549 aa4.67□□□□□ -1.66
VPS29-202ENST00000447578 IQGAP3Q86VI3 1631 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 A6NLC8 198 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 PPM1DO15297 605 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 HOXC11O43248 304 aaPredicted RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 DNPH1O43598 174 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 SOAT2O75908 522 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 ACTL6BO94805 426 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 SRGAP2BP0DMP2 458 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 VIPR2P41587 438 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 PTDSS1P48651 473 aaKnown RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 AARSP49588 968 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS29-202ENST00000447578 TUBP50607 506 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 TOB1P50616 345 aaPredicted RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 AP2B1P63010 937 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 SATB1Q01826 763 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 CUL4BQ13620 913 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 PDE1CQ14123 709 aaPredicted RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 IQCB1Q15051 598 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 ATPAF1Q5TC12 328 aaPredicted RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 PRAMEF17Q5VTA0 474 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 FCRL6Q6DN72 434 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 SLC18B1Q6NT16 456 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 CEP85Q6P2H3 762 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 SLC2A7Q6PXP3 512 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 HERC6Q8IVU3 1022 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 AFAP1Q8N556 730 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 OR1N1Q8NGS0 311 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 FAM136AQ96C01 138 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 EPS8L2Q9H6S3 715 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 ZBTB26Q9HCK0 441 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 IRAK4Q9NWZ3 460 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 TMOD4Q9NZQ9 345 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 FEM1BQ9UK73 627 aa4.66□□□□□ -1.66
VPS29-202ENST00000447578 POLR1AO95602 1720 aaPredicted RBP4.66□□□□□ -1.66
VPS29-202ENST00000447578 RTEL1-TNFRSF6BF6WH68 1400 aa4.65□□□□□ -1.66
VPS29-202ENST00000447578 SMG6Q86US8 1419 aaKnown RBP4.65□□□□□ -1.66
VPS29-202ENST00000447578 MAGI2Q86UL8 1455 aa4.65□□□□□ -1.66
VPS29-202ENST00000447578 WDR7Q9Y4E6 1490 aa4.65□□□□□ -1.66
VPS29-202ENST00000447578 AQP7P3A6NL99 342 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 PRSS47A8MTI9 375 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 PPP6CO00743 305 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 CCP110O43303 1012 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 MOSPD3O75425 235 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 JTBO76095 146 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 NTSR2O95665 410 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 GLP2RO95838 553 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 PECAM1P16284 738 aaPredicted RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 ITGALP20701 1170 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 SFPQP23246 707 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS29-202ENST00000447578 CD6P30203 668 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 BCAT1P54687 386 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 ALDH18A1P54886 795 aaKnown RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 TMF1P82094 1093 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 KRT17Q04695 432 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 TLE2Q04725 743 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 NSUN2Q08J23 767 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS29-202ENST00000447578 TRPC3Q13507 836 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 KCNAB1Q14722 419 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 DLGAP5Q15398 846 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 SLC5A9Q2M3M2 681 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 TRIM71Q2Q1W2 868 aaKnown RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 MORN5Q5VZ52 161 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 SLC9A4Q6AI14 798 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 MRNIPQ6NTE8 343 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 MZT2BQ6NZ67 158 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 C4orf50Q6ZRC1 276 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 KCTD20Q7Z5Y7 419 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 TBC1D1Q86TI0 1168 aaPredicted RBP4.65□□□□□ -1.67
VPS29-202ENST00000447578 HEATR4Q86WZ0 1026 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 GAS2L3Q86XJ1 694 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 RASGRP3Q8IV61 690 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 CPOQ8IVL8 374 aa4.65□□□□□ -1.67
VPS29-202ENST00000447578 PCYOX1LQ8NBM8 494 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms