RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TCP10LQ8TDR4 215 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 GLMNQ92990 594 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 PARVBQ9HBI1 364 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ACP6Q9NPH0 428 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 SLC24A2Q9UI40 661 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 DDX3XO00571 662 aaKnown RBP eCLIP17.58■□□□□ 0.48e-13■■■■□ 20.4
PTPRF-209ENST00000438120 KPNA6O60684 536 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 HMGCRP04035 888 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 FAM153BP0C7A2 387 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ABCG1P45844 678 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 ZNF268Q14587 947 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 FSCN1Q16658 493 aaKnown RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 FAM153CQ494X1 144 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 PRAMEF19Q5SWL8 479 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 MTSS1LQ765P7 747 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 A1CFQ9NQ94 594 aaKnown RBP17.58■□□□□ 0.4
PTPRF-209ENST00000438120 FAM153AQ9UHL3 310 aa17.58■□□□□ 0.4
PTPRF-209ENST00000438120 NCAM2O15394 837 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 ANXA11P50995 505 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 CORO7P57737 925 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RETSATQ6NUM9 610 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 SLC30A9Q6PML9 568 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 ATG16L2Q8NAA4 619 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 GAD1Q99259 594 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 PIK3C2BO00750 1634 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 WBP4O75554 376 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 CALB2P22676 271 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 MIPP30301 263 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 DEFA1P59665 94 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 DEFA3P59666 94 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 ELAVL2Q12926 359 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RNF148Q8N7C7 305 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 MID1IP1Q9NPA3 183 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 DMAP1Q9NPF5 467 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 L1RE1Q9UN81 338 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 PSMC3P17980 439 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 SLC12A3P55017 1021 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 ERVK-9P63128 1117 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 TCHHL1Q5QJ38 904 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 MTFMTQ96DP5 389 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 FMO4P31512 558 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RAB27AP51159 221 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 DNAJC14Q6Y2X3 702 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 LRRN4CLQ8ND94 238 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 CAMKK2Q96RR4 588 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 ABHD16BQ9H3Z7 469 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 WDR41Q9HAD4 459 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 SHOC2Q9UQ13 582 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 CRYL1Q9Y2S2 319 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 MOXD2PA6NHM9 499 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 F8VP50 259 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 SMIM22K7EJ46 135 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 MAPTP10636 758 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 TNNI3P19429 210 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RBM43Q6ZSC3 357 aaKnown RBP17.57■□□□□ 0.4
PTPRF-209ENST00000438120 PALB2Q86YC2 1186 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 GLIS3Q8NEA6 775 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 LRRC4BQ9NT99 713 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 CYP39A1Q9NYL5 469 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RAD54BQ9Y620 910 aa17.57■□□□□ 0.4
PTPRF-209ENST00000438120 RBAK-RBAKDNI3L0D1 243 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 DNALI1O14645 258 aaPredicted RBP17.56■□□□□ 0.4
PTPRF-209ENST00000438120 SARSP49591 514 aaKnown RBP17.56■□□□□ 0.4
PTPRF-209ENST00000438120 KCNT2Q6UVM3 1135 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 FGD2Q7Z6J4 655 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 KAT5Q92993 513 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 TMEM159Q96B96 161 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 MTERF3Q96E29 417 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 ADAM2Q99965 735 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 TBL1YQ9BQ87 522 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 BLOC1S4Q9NUP1 217 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 HES2Q9Y543 173 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 TM9SF1O15321 606 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 ZSCAN5DPP0CG00 497 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 GRK2P25098 689 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 CCT8P50990 548 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 SLC6A3Q01959 620 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 SGCGQ13326 291 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 FNDC5Q8NAU1 212 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 SALL1Q9NSC2 1324 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 MPOP05164 745 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 RENBPP51606 427 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 MYBPC2Q14324 1141 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 EML3Q32P44 896 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 CEP78Q5JTW2 689 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 ZNF438Q7Z4V0 828 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 GPR141Q7Z602 305 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 FBXO39Q8N4B4 442 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 SNRNP27Q8WVK2 155 aaKnown RBP17.56■□□□□ 0.4
PTPRF-209ENST00000438120 DPY30Q9C005 99 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 TCF7L2Q9NQB0 619 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 LOC102724159A0A0B4J2E5 919 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 DLGAP3O95886 979 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 HSPA13P48723 471 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 PWP2Q15269 919 aaKnown RBP17.56■□□□□ 0.4
PTPRF-209ENST00000438120 DACT2Q5SW24 774 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 BRSK2Q8IWQ3 736 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 ULBP1Q9BZM6 244 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 BATF3Q9NR55 127 aa17.56■□□□□ 0.4
PTPRF-209ENST00000438120 MPP6Q9NZW5 540 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms