RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ATG16L2Q8NAA4 619 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ENGASEQ8NFI3 743 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 GPKOWQ92917 476 aaPredicted RBP eCLIP7.35□□□□□ -1.23
VPS53-204ENST00000437048 KCTD14Q9BQ13 255 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 PLA2G12BQ9BX93 195 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 PCMTD2Q9NV79 361 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 LSM7Q9UK45 103 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 AGO2Q9UKV8 859 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 ZFYVE16Q7Z3T8 1539 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 LRRC10BA6NIK2 292 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ELF3P78545 371 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 ELP6Q0PNE2 266 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 TTLL4Q14679 1199 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 REXO4Q9GZR2 422 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 PCDHGB6Q9Y5F9 930 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 FADS3Q9Y5Q0 445 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ISPDA4D126 451 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 CHADO15335 359 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 RBM34P42696 430 aaKnown RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 GCNT1Q02742 428 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 HSF2Q03933 536 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ERICH5Q6P6B1 374 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 CLVS1Q8IUQ0 354 aaPredicted RBP7.35□□□□□ -1.23
VPS53-204ENST00000437048 FBXW8Q8N3Y1 598 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 TMEM120AQ9BXJ8 343 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 DNAJB1P25685 340 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 CHRNDQ07001 517 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 COBLL1Q53SF7 1204 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 FAM47AQ5JRC9 791 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 DEFB107AQ8IZN7 70 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 EEF1AKMT1Q8WVE0 214 aa7.35□□□□□ -1.23
VPS53-204ENST00000437048 ERN1O75460 977 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 PAMR1Q6UXH9 720 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GNPTGQ9UJJ9 305 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 BICRAQ9NZM4 1560 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 C10orf107Q8IVU9 208 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 RBM12BQ8IXT5 1001 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 C9orf43Q8TAL5 461 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 TEKT5Q96M29 485 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 KCTD15Q96SI1 283 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CD248Q9HCU0 757 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 FIS1Q9Y3D6 152 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 RPS6KL1Q9Y6S9 549 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 CRB1P82279 1406 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 INO80Q9ULG1 1556 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 COL6A2P12110 1019 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 STOMP27105 288 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 OTUD4Q01804 1114 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CDH17Q12864 832 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 C6orf62Q9GZU0 229 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CDC42EP4Q9H3Q1 356 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 DHX35Q9H5Z1 703 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 PAK6Q9NQU5 681 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 ITGA11Q9UKX5 1188 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 DDX39AO00148 427 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 SNX3O60493 162 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 TMCC2O75069 709 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PAEPP09466 180 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 CYP19A1P11511 503 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 PTDSS1P48651 473 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 NEK3P51956 506 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 CPXCR1Q8N123 301 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 HHATLQ9HCP6 504 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GPD2P43304 727 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 ATP1A4Q13733 1029 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 ZNF75CPQ92670 426 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 ZNF496Q96IT1 587 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 PDK3Q15120 406 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 SV2CQ496J9 727 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 FAM120BQ96EK7 910 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CRELD1Q96HD1 420 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 MAN2B2Q9Y2E5 1009 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GCLMP48507 274 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GTF2IP78347 998 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PITPNAQ00169 270 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 ZBTB6Q15916 424 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 DSTYKQ6XUX3 929 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PID1Q7Z2X4 250 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 COLGALT2Q8IYK4 626 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 SCGB3A2Q96PL1 93 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 RBM4BQ9BQ04 359 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CINPQ9BW66 212 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 RBM4Q9BWF3 364 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 JPH1Q9HDC5 661 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 GALNT8Q9NY28 637 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 AASSQ9UDR5 926 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 HAO1Q9UJM8 370 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 LEF1Q9UJU2 399 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 PSMD13Q9UNM6 376 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 TNFRSF21O75509 655 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 ALDH1A1P00352 501 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 SERPINF2P08697 491 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 ALAS1P13196 640 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 BTDP43251 543 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 LONRF1Q17RB8 773 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 KLHDC7AQ5VTJ3 777 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GRHL2Q6ISB3 625 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 MRPL39Q9NYK5 338 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 SSR3Q9UNL2 185 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 SAMD4AQ9UPU9 718 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms