RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 NCKIPSDQ9NZQ3 722 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 TIMM13Q9Y5L4 95 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 RARAP10276 462 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF7P17097 686 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PGM1P36871 562 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 IL1RL1Q01638 556 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 RASIP1Q5U651 963 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 NECAB2Q7Z6G3 386 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 SNX31Q8N9S9 440 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 FAM161BQ96MY7 647 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ATXN3LQ9H3M9 355 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PCDHGC3Q9UN70 934 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PIGRP01833 764 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 TPBGLP0DKB5 382 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PIK3CGP48736 1102 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 OLFML2BQ68BL8 750 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PIGZQ86VD9 579 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 C2orf15Q8WU43 125 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ACSF2Q96CM8 615 aaPredicted RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 FAM118BQ9BPY3 351 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 IL22Q9GZX6 179 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 TKTL2Q9H0I9 626 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 WWOXQ9NZC7 414 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 EIF3LQ9Y262 564 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 SOWAHBA6NEL2 793 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 CBX4O00257 560 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 SYN3O14994 580 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 ITGAVP06756 1048 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 IRF5Q13568 498 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 CUL3Q13618 768 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 IRF2BP2Q7Z5L9 587 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 PALB2Q86YC2 1186 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 LZICQ8WZA0 190 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 CAPNS2Q96L46 248 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 TFR2Q9UP52 801 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 CICQ96RK0 1608 aaPredicted RBP12.27□□□□□ -0.44
PTPRF-205ENST00000414879 A0A0A0MRY4 1105 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 ARL4DP49703 201 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 IRAK1P51617 712 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 KCNK10P57789 538 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 PRAMEF19Q5SWL8 479 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 TRPM8Q7Z2W7 1104 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 EDEM1Q92611 657 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 PGM2Q96G03 612 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 SPATA13Q96N96 652 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 PANX3Q96QZ0 392 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 PNKPQ96T60 521 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 DDX20Q9UHI6 824 aaKnown RBP12.27□□□□□ -0.44
PTPRF-205ENST00000414879 LNPEPQ9UIQ6 1025 aa12.27□□□□□ -0.44
PTPRF-205ENST00000414879 ITGB4P16144 1822 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 QSOX1O00391 747 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 CCDC130P13994 396 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 CDC25CP30307 473 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 PDCD2Q16342 344 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-205ENST00000414879 ECM1Q16610 540 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 HABP4Q5JVS0 413 aaKnown RBP12.27□□□□□ -0.45
PTPRF-205ENST00000414879 CACHD1Q5VU97 1274 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 EEF1DP3Q658K8 133 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 CREG2Q8IUH2 290 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 SEC16BQ96JE7 1060 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 RNF103O00237 685 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 PPFIA2O75334 1257 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 ABHD2P08910 425 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 COL6A1P12109 1028 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 CD52P31358 61 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 PPP3CCP48454 512 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 MRPS5P82675 430 aaKnown RBP12.27□□□□□ -0.45
PTPRF-205ENST00000414879 C2CD6Q53TS8 623 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 KCNT2Q6UVM3 1135 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 STRA8Q7Z7C7 330 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 PPP1R16AQ96I34 528 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 RNF112Q9ULX5 631 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 ACTL7BQ9Y614 415 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 SPACA6W5XKT8 324 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 TOGARAM1Q9Y4F4 1720 aa12.27□□□□□ -0.45
PTPRF-205ENST00000414879 ZNF839A8K0R7 811 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 HSPA1AP0DMV8 641 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 HSPA1BP0DMV9 641 aaKnown RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 CHI3L2Q15782 390 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ZCWPW2Q504Y3 356 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 LRRC8EQ6NSJ5 796 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 LGI2Q8N0V4 545 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 HJURPQ8NCD3 748 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 RNF157Q96PX1 679 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ZYG11BQ9C0D3 744 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 NMRAL1Q9HBL8 299 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ASAH2Q9NR71 780 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 OR12D3Q9UGF7 316 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SNED1Q8TER0 1413 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 KANSL1LA0AUZ9 987 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 LGR5O75473 907 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 CYP1A1P04798 512 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-205ENST00000414879 RPN2P04844 631 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 TYMPP19971 482 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 ATP4AP20648 1035 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SERPINA4P29622 427 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 MMP13P45452 471 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 EVX2Q03828 476 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 KRT72Q14CN4 511 aa12.26□□□□□ -0.45
PTPRF-205ENST00000414879 SPDYAQ5MJ70 313 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms