RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 IQSEC1Q6DN90 963 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 TLK2Q86UE8 772 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 ZDHHC14Q8IZN3 488 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 OR52K1Q8NGK4 314 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 TSPAN17Q96FV3 270 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 TINF2Q9BSI4 451 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 NXF3Q9H4D5 531 aaKnown RBP19.03■□□□□ 0.64
USP48-204ENST00000400301 TUBGCP4Q9UGJ1 667 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 SOX13Q9UN79 622 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 PTPN1P18031 435 aaKnown RBP19.03■□□□□ 0.64
USP48-204ENST00000400301 ATP4AP20648 1035 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 POU6F1Q14863 301 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 TWNKQ96RR1 684 aa19.03■□□□□ 0.64
USP48-204ENST00000400301 PRG3Q9Y2Y8 225 aaPredicted RBP19.03■□□□□ 0.64
USP48-204ENST00000400301 BTAF1O14981 1849 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 YBX3P16989 372 aaKnown RBP eCLIP19.02■□□□□ 0.643e-7■□□□□ 10.8
USP48-204ENST00000400301 AXLP30530 894 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 ZNF157P51786 506 aaPredicted RBP19.02■□□□□ 0.64
USP48-204ENST00000400301 SLC34A1Q06495 639 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 LRRC52Q8N7C0 313 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 CALML6Q8TD86 181 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 UNKQ9C0B0 810 aaKnown RBP19.02■□□□□ 0.64
USP48-204ENST00000400301 ACOT9Q9Y305 439 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 MRPL42Q9Y6G3 142 aaKnown RBP19.02■□□□□ 0.64
USP48-204ENST00000400301 SKAP2O75563 359 aaPredicted RBP19.02■□□□□ 0.64
USP48-204ENST00000400301 ARIH2O95376 493 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 USP17L7P0C7H9 530 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 THPOP40225 353 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 GEMP55040 296 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 RIPK1Q13546 671 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 LRRC8EQ6NSJ5 796 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 GLB1LQ6UWU2 654 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 UNC5AQ6ZN44 842 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 CLNKQ7Z7G1 428 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 NIPA2Q8N8Q9 360 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 B3GALNT2Q8NCR0 500 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 SENP8Q96LD8 212 aa19.02■□□□□ 0.64
USP48-204ENST00000400301 C2CD4BA6NLJ0 364 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 STMN1P16949 149 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 NPR3P17342 541 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 ETFBP38117 255 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 PRAMEF19Q5SWL8 479 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 GRTP1Q5TC63 336 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 SEL1L3Q68CR1 1132 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 KCNMB4Q86W47 210 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 PIWIL2Q8TC59 973 aaKnown RBP19.02■□□□□ 0.63
USP48-204ENST00000400301 NENFQ9UMX5 172 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 PCDHA11Q9Y5I1 949 aa19.02■□□□□ 0.63
USP48-204ENST00000400301 MGRN1O60291 552 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SNX2O60749 519 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 ACCSLQ4AC99 568 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SPANXN3Q5MJ09 141 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SETD3Q86TU7 594 aaPredicted RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 TEKT4Q8WW24 435 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 GAD1Q99259 594 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 FICDQ9BVA6 458 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 MINDY3Q9H8M7 445 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SPDYE5A6NIY4 337 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 TTLL13PA6NNM8 815 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 TADA2AO75478 443 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SIX1Q15475 284 aaPredicted RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 MAPRE1Q15691 268 aaKnown RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 FAM83EQ2M2I3 478 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 DEFB107AQ8IZN7 70 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 PDZD8Q8NEN9 1154 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 SDCCAG3Q96C92 435 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 AAASQ9NRG9 546 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 THEGQ9P2T0 379 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 C10orf71Q711Q0 1435 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 TRIM13O60858 407 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 GPD2P43304 727 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 PSEN2P49810 448 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 CDH17Q12864 832 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 CPNE1Q99829 537 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 LRMDAQ9H2I8 198 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 COL22A1Q8NFW1 1626 aaPredicted RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 MYH7BA7E2Y1 1941 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 NRCAMQ92823 1304 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 LTFP02788 710 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 OR1G1P47890 313 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 NUMBP49757 651 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 FLOT2Q14254 428 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 OASLQ15646 514 aaKnown RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 TDRD5Q8NAT2 981 aaKnown RBP19.01■□□□□ 0.63
USP48-204ENST00000400301 FAM13CQ8NE31 585 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 ANKRD27Q96NW4 1050 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 MAST2Q6P0Q8 1798 aa19.01■□□□□ 0.63
USP48-204ENST00000400301 CLDN5O00501 218 aa19■□□□□ 0.63
USP48-204ENST00000400301 THRAP10827 490 aa19■□□□□ 0.63
USP48-204ENST00000400301 MATKP42679 507 aa19■□□□□ 0.63
USP48-204ENST00000400301 BEX3Q00994 111 aa19■□□□□ 0.63
USP48-204ENST00000400301 CCDC15Q0P6D6 951 aa19■□□□□ 0.63
USP48-204ENST00000400301 KLF1Q13351 362 aaPredicted RBP19■□□□□ 0.63
USP48-204ENST00000400301 PPTC7Q8NI37 304 aa19■□□□□ 0.63
USP48-204ENST00000400301 PPP1R2P1Q96PQ5 205 aa19■□□□□ 0.63
USP48-204ENST00000400301 CSPG4P5Q96PW8 444 aa19■□□□□ 0.63
USP48-204ENST00000400301 HERPUD2Q9BSE4 406 aa19■□□□□ 0.63
USP48-204ENST00000400301 CYP4F12Q9HCS2 524 aa19■□□□□ 0.63
USP48-204ENST00000400301 ARL8BQ9NVJ2 186 aa19■□□□□ 0.63
USP48-204ENST00000400301 RBM22Q9NW64 420 aaKnown RBP eCLIP19■□□□□ 0.631e-8■■■■■ 30.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms