RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CYBBP04839 570 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 OXTRP30559 389 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 COPAP53621 1224 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 TMEM215Q68D42 235 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 RSRC2Q7L4I2 434 aaKnown RBP29.76■■■□□ 2.35
HMGB1-205ENST00000399494 PPM1KQ8N3J5 372 aa29.76■■■□□ 2.35
HMGB1-205ENST00000399494 MEI4A8MW99 385 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 TKTL1P51854 596 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 EIF4HQ15056 248 aaKnown RBP29.75■■■□□ 2.35
HMGB1-205ENST00000399494 E2F5Q15329 346 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 C11orf57Q6ZUT1 292 aaPredicted RBP29.75■■■□□ 2.35
HMGB1-205ENST00000399494 EHBP1Q8NDI1 1231 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 DDI1Q8WTU0 396 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 PRCCQ92733 491 aaPredicted RBP29.75■■■□□ 2.35
HMGB1-205ENST00000399494 PCDHB9Q9Y5E1 797 aa29.75■■■□□ 2.35
HMGB1-205ENST00000399494 METTL12A8MUP2 240 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 TIMM44O43615 452 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 ZBED1O96006 694 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 IGLV3-19P01714 112 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 CAPNS1P04632 268 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 PRKCSHP14314 528 aaPredicted RBP29.74■■■□□ 2.35
HMGB1-205ENST00000399494 TRIP4Q15650 581 aaPredicted RBP29.74■■■□□ 2.35
HMGB1-205ENST00000399494 MAN2A1Q16706 1144 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 DCAF12L1Q5VU92 463 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 BHLHA9Q7RTU4 235 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 NAXDQ8IW45 347 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 ENOX1Q8TC92 643 aaKnown RBP29.74■■■□□ 2.35
HMGB1-205ENST00000399494 SORCS1Q8WY21 1168 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 NDRG1Q92597 394 aaKnown RBP29.74■■■□□ 2.35
HMGB1-205ENST00000399494 PLD4Q96BZ4 506 aa29.74■■■□□ 2.35
HMGB1-205ENST00000399494 INTS2Q9H0H0 1204 aaKnown RBP29.74■■■□□ 2.35
HMGB1-205ENST00000399494 TULP2O00295 520 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 PRKCHP24723 683 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 TYRO3Q06418 890 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 KCNJ12Q14500 433 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 KLHL40Q2TBA0 621 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 ZCCHC9Q8N567 271 aaKnown RBP29.73■■■□□ 2.35
HMGB1-205ENST00000399494 LMO3Q8TAP4 145 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 NUP58Q9BVL2 599 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 ULBP1Q9BZM6 244 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 CIPCQ9C0C6 399 aa29.73■■■□□ 2.35
HMGB1-205ENST00000399494 SAMSN1Q9NSI8 373 aaKnown RBP29.73■■■□□ 2.35
HMGB1-205ENST00000399494 TAF4O00268 1085 aa29.72■■■□□ 2.35
HMGB1-205ENST00000399494 PES1O00541 588 aaKnown RBP29.72■■■□□ 2.35
HMGB1-205ENST00000399494 SLC8A3P57103 927 aa29.72■■■□□ 2.35
HMGB1-205ENST00000399494 ADAMTS14Q8WXS8 1223 aa29.72■■■□□ 2.35
HMGB1-205ENST00000399494 TUBGCP2Q9BSJ2 902 aa29.72■■■□□ 2.35
HMGB1-205ENST00000399494 MIR1-1HGQ9H1L0 117 aa29.72■■■□□ 2.35
HMGB1-205ENST00000399494 CBFA2T3O75081 653 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 EPHX1P07099 455 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 ACADMP11310 421 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 BNC1Q01954 994 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 PDE4CQ08493 712 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 MPPE1Q53F39 396 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 GBP6Q6ZN66 633 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 C1orf216Q8TAB5 229 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 CRACR2AQ9BSW2 395 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 IL21RQ9HBE5 538 aa29.71■■■□□ 2.35
HMGB1-205ENST00000399494 OLA1Q9NTK5 396 aaKnown RBP29.71■■■□□ 2.35
HMGB1-205ENST00000399494 BCAT2O15382 392 aaPredicted RBP29.7■■■□□ 2.35
HMGB1-205ENST00000399494 FTH1P19P0C7X4 201 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 EEF1GP26641 437 aaKnown RBP29.7■■■□□ 2.35
HMGB1-205ENST00000399494 SERPINA13PQ6UXR4 307 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 RRAGAQ7L523 313 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 FMNL3Q8IVF7 1028 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 ARHGEF19Q8IW93 802 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 PNPLA1Q8N8W4 532 aa29.7■■■□□ 2.35
HMGB1-205ENST00000399494 NAT10Q9H0A0 1025 aaKnown RBP29.7■■■□□ 2.35
HMGB1-205ENST00000399494 EIF2B4Q9UI10 523 aaKnown RBP29.7■■■□□ 2.35
HMGB1-205ENST00000399494 PKD1L2Q7Z442 2459 aa29.7■■■□□ 2.34
HMGB1-205ENST00000399494 XPO1O14980 1071 aaKnown RBP29.69■■■□□ 2.34
HMGB1-205ENST00000399494 TSPAN3O60637 253 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 HOXD9P28356 352 aaPredicted RBP29.69■■■□□ 2.34
HMGB1-205ENST00000399494 MYL5Q02045 173 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 GCNT1Q02742 428 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 CAMK2GQ13555 558 aaPredicted RBP29.69■■■□□ 2.34
HMGB1-205ENST00000399494 GOLGA7BQ2TAP0 167 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 VWA3BQ502W6 1294 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 TCP11X2Q5H9J9 407 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 LRSAM1Q6UWE0 723 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 NDST4Q9H3R1 872 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 GAREM1Q9H706 876 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 STOML2Q9UJZ1 356 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 TSPAN16Q9UKR8 245 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 PCOLCE2Q9UKZ9 415 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 HBS1LQ9Y450 684 aaKnown RBP29.69■■■□□ 2.34
HMGB1-205ENST00000399494 PCDHB4Q9Y5E5 795 aa29.69■■■□□ 2.34
HMGB1-205ENST00000399494 DSPP15924 2871 aaKnown RBP29.69■■■□□ 2.34
HMGB1-205ENST00000399494 CACNA1GO43497 2377 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 CKAP5Q14008 2032 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 GTPBP10A4D1E9 387 aaKnown RBP29.68■■■□□ 2.34
HMGB1-205ENST00000399494 LETM1O95202 739 aaPredicted RBP29.68■■■□□ 2.34
HMGB1-205ENST00000399494 C7P10643 843 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 HLA-EP13747 358 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 HLA-FP30511 346 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 HARS2P49590 506 aaKnown RBP29.68■■■□□ 2.34
HMGB1-205ENST00000399494 ARID5AQ03989 594 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 RING1Q06587 406 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 EXOC3L4Q17RC7 722 aa29.68■■■□□ 2.34
HMGB1-205ENST00000399494 BSPRYQ5W0U4 402 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms