RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 RIN3Q8TB24 985 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TRPC4APQ8TEL6 797 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CPT1BQ92523 772 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SHC3Q92529 594 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 NGLY1Q96IV0 654 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 KREMEN1Q96MU8 473 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 VPS33BQ9H267 617 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 GPATCH2LQ9NWQ4 482 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 DRG1Q9Y295 367 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 NEO1Q92859 1461 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 PDZK1P1A8MUH7 402 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 POLBP06746 335 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ACAT1P24752 427 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 MAP3K7CLP57077 242 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 RALGDSQ12967 914 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SEZ6Q53EL9 994 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ABRAXAS1Q6UWZ7 409 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 TMEM26Q6ZUK4 368 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 FBXO33Q7Z6M2 555 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 HERC6Q8IVU3 1022 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 EHD1Q9H4M9 534 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 DNAJA2O60884 412 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CLASP2O75122 1294 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 XRCC1P18887 633 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CDH2P19022 906 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SLC18A1P54219 525 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PSME3P61289 254 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SULT2A1Q06520 285 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CUL2Q13617 745 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PABPC1LQ4VXU2 614 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ABRAQ8N0Z2 381 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PKP2Q99959 881 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CYP4F12Q9HCS2 524 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SSU72Q9NP77 194 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PRPF19Q9UMS4 504 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 A0A088AWK7 358 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PCP4L1A6NKN8 68 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CCNT2O60583 730 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 TSC22D2O75157 780 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SLITRK3O94933 977 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 KCNH1O95259 989 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PIGNO95427 931 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 TFAP2AP05549 437 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ENO2P09104 434 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 GNL1P36915 607 aaPredicted RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 COPZ1P61923 177 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 PLIN5Q00G26 463 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ORC1Q13415 861 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF846Q147U1 533 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 FAM47CQ5HY64 1035 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 NPNTQ6UXI9 565 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 C3orf67Q6ZVT6 689 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 OR7A2PQ8NGA2 310 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 ACTRT2Q8TDY3 377 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 USP33Q8TEY7 942 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 GIPC2Q8TF65 315 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 SLC7A3Q8WY07 619 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 NSMCE3Q96MG7 304 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 RTKNQ9BST9 563 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 HACD3Q9P035 362 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 CROTQ9UKG9 612 aa9.54□□□□□ -0.88
COL28A1-201ENST00000399429 FAM208AQ9UK61 1670 aaKnown RBP9.54□□□□□ -0.88
COL28A1-201ENST00000399429 WDR27A2RRH5 827 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RGS5O15539 181 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 SLC26A4O43511 780 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 SERPINI2O75830 405 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 BAIAP3O94812 1187 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 VAPBO95292 243 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ITGAVP06756 1048 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 FDX1P10109 184 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF182P17025 639 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-201ENST00000399429 SLC5A2P31639 672 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 THOP1P52888 689 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 NAGLUP54802 743 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 MTMR1Q13613 665 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 CYP51A1Q16850 503 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF667Q5HYK9 610 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 SLC27A3Q5K4L6 730 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RHBDF2Q6PJF5 856 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RAB44Q7Z6P3 723 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-201ENST00000399429 TXNRD3Q86VQ6 643 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ARHGEF1Q92888 912 aaKnown RBP9.53□□□□□ -0.88
COL28A1-201ENST00000399429 BBS2Q9BXC9 721 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RNF38Q9H0F5 515 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 DDX43Q9NXZ2 648 aaKnown RBP9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ST14Q9Y5Y6 855 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 MRASO14807 208 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 ITGAXP20702 1163 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RGS7P49802 495 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 RAB15P59190 212 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 UBE3AQ05086 875 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 STRA8Q7Z7C7 330 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 HORMAD1Q86X24 394 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 OSBPL10Q9BXB5 764 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 PLK2Q9NYY3 685 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 GPRC5DQ9NZD1 345 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 KCND2Q9NZV8 630 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 PI4KBQ9UBF8 816 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 DSEQ9UL01 958 aa9.53□□□□□ -0.88
COL28A1-201ENST00000399429 STX16-NPEPL1H3BU86 382 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms