RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 RTN3O95197 1032 aaPredicted RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 CD48P09326 243 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SPATA31D3P0C874 917 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 KRT10P13645 584 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 YWHAQP27348 245 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ELF1P32519 619 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 CETN2P41208 172 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SLCO1A2P46721 670 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ERVFC1P60507 584 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 DEUP1Q05D60 604 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 OTUD1Q5VV17 481 aaPredicted RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 CCDC137Q6PK04 289 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 SPATA31D4Q6ZUB0 917 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SCD5Q86SK9 330 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 EPS8L3Q8TE67 593 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 N4BP2L2Q92802 583 aaPredicted RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 FBXO32Q969P5 355 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SPATA17Q96L03 361 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 OSBPL8Q9BZF1 889 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 NSRP1Q9H0G5 558 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 ENTPD7Q9NQZ7 604 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 DDIT4Q9NX09 232 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.87□□□□□ -0.35
CIITA-202ENST00000381835 GMIPQ9P107 970 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 FNIP2Q9P278 1114 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 PCYOX1Q9UHG3 505 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 PLXNA3P51805 1871 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 PRRG1O14668 218 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ATP6V1G2O95670 118 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 GSTA1P08263 222 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 KDELR1P24390 212 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 IFNAR2P48551 515 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 CDH6P55285 790 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 TAF10Q12962 218 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SLMAPQ14BN4 828 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 BOLA3Q53S33 107 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ZC3H12AQ5D1E8 599 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 UBAP2Q5T6F2 1119 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 TTC27Q6P3X3 843 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SPOCD1Q6ZMY3 1216 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 MON1AQ86VX9 555 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ZDHHC14Q8IZN3 488 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 CCDC185Q8N715 623 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 CCDC63Q8NA47 563 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 POF1BQ8WVV4 589 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SNRNP25Q9BV90 132 aaKnown RBP12.87□□□□□ -0.35
CIITA-202ENST00000381835 CALN1Q9BXU9 219 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 ABCC13Q9NSE7 274 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 PIGVQ9NUD9 493 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 BAIAP2L1Q9UHR4 511 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SSX2IPQ9Y2D8 614 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 RWDD3Q9Y3V2 267 aa12.87□□□□□ -0.35
CIITA-202ENST00000381835 SLC38A8A6NNN8 435 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 RASGRF2O14827 1237 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 RIPK2O43353 540 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 DNAJB1P25685 340 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 ALDH1A3P47895 512 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 CREMQ03060 361 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 PLPP4Q5VZY2 271 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 TAOK1Q7L7X3 1001 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 CCDC105Q8IYK2 499 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 CMASQ8NFW8 434 aaPredicted RBP12.86□□□□□ -0.35
CIITA-202ENST00000381835 TRIM62Q9BVG3 475 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 UBE2OQ9C0C9 1292 aaKnown RBP12.86□□□□□ -0.35
CIITA-202ENST00000381835 RXFP1Q9HBX9 757 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 OSER1Q9NX31 292 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 IL37Q9NZH6 218 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 SLC12A4Q9UP95 1085 aa12.86□□□□□ -0.35
CIITA-202ENST00000381835 C3orf70A6NLC5 250 aaPredicted RBP12.85□□□□□ -0.35
CIITA-202ENST00000381835 FSCN2O14926 492 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 CDKN2BP42772 138 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 KRT81Q14533 505 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 CA9Q16790 459 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 FAM133BQ5BKY9 247 aaKnown RBP12.85□□□□□ -0.35
CIITA-202ENST00000381835 TFDP3Q5H9I0 405 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TRPM8Q7Z2W7 1104 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TAC4Q86UU9 113 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 GPR65Q8IYL9 337 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TNS4Q8IZW8 715 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 SPPL3Q8TCT6 385 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 MICAL1Q8TDZ2 1067 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 DQX1Q8TE96 717 aaKnown RBP12.85□□□□□ -0.35
CIITA-202ENST00000381835 RNF139Q8WU17 664 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TMEM109Q9BVC6 243 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 MAGEB5Q9BZ81 275 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 DHX35Q9H5Z1 703 aaKnown RBP12.85□□□□□ -0.35
CIITA-202ENST00000381835 CCDC134Q9H6E4 229 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 NOD2Q9HC29 1040 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TMPRSS4Q9NRS4 437 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 RRN3Q9NYV6 651 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 YIPF1Q9Y548 306 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 FAM92AA1XBS5 289 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TGM5O43548 720 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 ENDOD1O94919 500 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 RARGP13631 454 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 COPS2P61201 443 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 AUHQ13825 339 aaKnown RBP12.85□□□□□ -0.35
CIITA-202ENST00000381835 TAF12Q16514 161 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 CCDC38Q502W7 563 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 PPP6R3Q5H9R7 873 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms