RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CCND2P30279 289 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SLC1A4P43007 532 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TAF12Q16514 161 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 KLHL12Q53G59 568 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HSD17B12Q53GQ0 312 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 KRT39Q6A163 491 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 OTOP3Q7RTS5 596 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 KRT74Q7RTS7 529 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SLFN11Q7Z7L1 901 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CRLF3Q8IUI8 442 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SVOPQ8N4V2 548 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 METTL25Q8N6Q8 603 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PBXIP1Q96AQ6 731 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PPP3R2Q96LZ3 170 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 C1QTNF7Q9BXJ2 289 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 NEUROG2Q9H2A3 272 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ERVMER34-1Q9H9K5 563 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ANAPC2Q9UJX6 822 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SPATA2Q9UM82 520 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 INPP5FQ9Y2H2 1132 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 AXIN2Q9Y2T1 843 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 INO80Q9ULG1 1556 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 H0Y626 953 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CDC27P30260 824 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SHMT1P34896 483 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MTHFRP42898 656 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 BMXP51813 675 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 EIF4A1P60842 406 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 RHAGQ02094 409 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 BNIP2Q12982 314 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 PTPROQ16827 1216 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CERKLQ49MI3 558 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 BROXQ5VW32 411 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 TXNDC11Q6PKC3 985 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 UNC5AQ6ZN44 842 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GADL1Q6ZQY3 521 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 RNF207Q6ZRF8 634 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 RIC3Q7Z5B4 369 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 FOXP4Q8IVH2 680 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CHERPQ8IWX8 916 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MICALL2Q8IY33 904 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 LIX1Q8N485 282 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 MARCH10Q8NA82 808 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ACTRT2Q8TDY3 377 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 DNAJA4Q8WW22 397 aaPredicted RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 FBXL18Q96ME1 805 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 HINFPQ9BQA5 517 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 FAM213AQ9BRX8 229 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 AP1M1Q9BXS5 423 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 IL25Q9H293 177 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 ATP13A3Q9H7F0 1226 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 NIPAL2Q9H841 368 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 SALL4Q9UJQ4 1053 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 GNEQ9Y223 722 aaKnown RBP4.26□□□□□ -1.73
NEDD4-201ENST00000338963 CACNG2Q9Y698 323 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 A3GALT2U3KPV4 340 aa4.26□□□□□ -1.73
NEDD4-201ENST00000338963 H3BNH8 94 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLITRK5O94991 958 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SEMA3DO95025 777 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLC4A1P02730 911 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 INHBBP09529 407 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 XPAP23025 273 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PEX2P28328 305 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 ATP6V1E1P36543 226 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TSPAN7P41732 249 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CENPCQ03188 943 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 KDSRQ06136 332 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CLEC16AQ2KHT3 1053 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OGFOD2Q6N063 350 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CGB2Q6NT52 195 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 STRA8Q7Z7C7 330 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC185Q8N715 623 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 OR52K2Q8NGK3 314 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SPOCK2Q92563 424 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLCO2A1Q92959 643 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 HES6Q96HZ4 224 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MAP6Q96JE9 813 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PACSIN1Q9BY11 444 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RNF41Q9H4P4 317 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SMYD3Q9H7B4 428 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SP110Q9HB58 689 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 KMT5AQ9NQR1 393 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 KDM5AP29375 1690 aaKnown RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 PNMA6EA0A0J9YXQ4 647 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 C12orf71A8MTZ7 269 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 E7EWF7 191 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 LAD1O00515 517 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TOR1AO14656 332 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 USP1O94782 785 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CYP21A2P08686 494 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CDC25AP30304 524 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 RORAP35398 523 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 HPCAL1P37235 193 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 MAPK12P53778 367 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 TSPAN5P62079 268 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SELENBP1Q13228 472 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 LRIT3Q3SXY7 679 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 CATSPER4Q7RTX7 472 aa4.25□□□□□ -1.73
NEDD4-201ENST00000338963 SLC44A2Q8IWA5 706 aaPredicted RBP4.25□□□□□ -1.73
NEDD4-201ENST00000338963 GRAMD1CQ8IYS0 662 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms