RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 NR2E3Q9Y5X4 410 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 ACKR2O00590 384 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 ZSCAN9O15535 394 aaPredicted RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 CSDE1O75534 798 aaKnown RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 SERPINE1P05121 402 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 PFKMP08237 780 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 ITGAXP20702 1163 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 RGS7P49802 495 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 PRKG1Q13976 671 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 TRIP10Q15642 601 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 RBM44Q6ZP01 1051 aaKnown RBP13.84□□□□□ -0.19
SKA3-202ENST00000314759 FRMD7Q6ZUT3 714 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 CYS1Q717R9 158 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 PHTF2Q8N3S3 785 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 GCNAQ96QF7 691 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 MAGEB5Q9BZ81 275 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 CDT1Q9H211 546 aa13.84□□□□□ -0.19
SKA3-202ENST00000314759 BRWD3Q6RI45 1802 aa13.83□□□□□ -0.19
SKA3-202ENST00000314759 INO80B-WBP1J3KQ70 363 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 GLRA3O75311 464 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ALDH1A2O94788 518 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 RAG1P15918 1043 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 SERPINB6P35237 376 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 MAP7Q14244 749 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 TMEM132AQ24JP5 1023 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 NBPF12Q5TAG4 269 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 FAM160B1Q5W0V3 765 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PDPK2PQ6A1A2 396 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 JADE1Q6IE81 842 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 CDKL3Q8IVW4 592 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 ACMSDQ8TDX5 336 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 JADE3Q92613 823 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 INO80BQ9C086 356 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 GBA2Q9HCG7 927 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 XPNPEP3Q9NQH7 507 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 DNAJC28Q9NX36 388 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 TSPAN16Q9UKR8 245 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 FZD1Q9UP38 647 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PSAT1Q9Y617 370 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ANK1P16157 1881 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 LCTP09848 1927 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 LACTBL1A8MY62 500 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ZBTB42B2RXF5 422 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 F5H423 210 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 H3BNX3 289 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ADCY6O43306 1168 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ZMPSTE24O75844 475 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PTPRAP18433 802 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 NCF2P19878 526 aaPredicted RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 CYP2F1P24903 491 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 GMPRP36959 345 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 CHN2P52757 468 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 XIAPP98170 497 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 FOLH1Q04609 750 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 NIPAL4Q0D2K0 466 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 TNFAIP1Q13829 316 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PPM1JQ5JR12 505 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 C4orf22Q6V702 233 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PACS1Q6VY07 963 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 TRIM50Q86XT4 487 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 C12orf29Q8N999 325 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 KHSRPQ92945 711 aaKnown RBP eCLIP13.83□□□□□ -0.2
SKA3-202ENST00000314759 CMTM5Q96DZ9 223 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 NLRP4Q96MN2 994 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 ZNF670Q9BS34 389 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 FZD8Q9H461 694 aa13.83□□□□□ -0.2
SKA3-202ENST00000314759 PIH1D1Q9NWS0 290 aaKnown RBP13.83□□□□□ -0.2
SKA3-202ENST00000314759 SF3B1O75533 1304 aaKnown RBP eCLIP13.83□□□□□ -0.2
SKA3-202ENST00000314759 PHIPQ8WWQ0 1821 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 C15orf38-AP3S2A0A0A6YYH1 394 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 CAPN8A6NHC0 703 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 NDST1P52848 882 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 SEMA5AQ13591 1074 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 STEAP4Q687X5 459 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 CASC4Q6P4E1 433 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 KCNT2Q6UVM3 1135 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 ARPINQ7Z6K5 226 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 NIM1KQ8IY84 436 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 FBXW8Q8N3Y1 598 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 METTL25Q8N6Q8 603 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 DNERQ8NFT8 737 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 PPP4R1Q8TF05 950 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 DGCR14Q96DF8 476 aaKnown RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 PRICKLE1Q96MT3 831 aaPredicted RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 MINDY3Q9H8M7 445 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 SMIM31A0A1B0GVY4 71 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 GPR25O00155 361 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 PEX10O60683 326 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 IL18RAPO95256 599 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 TFAP2AP05549 437 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 ALOX15P16050 662 aaPredicted RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 TFE3P19532 575 aaPredicted RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 HDAC4P56524 1084 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 TBL3Q12788 808 aaKnown RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 TLR1Q15399 786 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 SMAD1Q15797 465 aaKnown RBP13.82□□□□□ -0.2
SKA3-202ENST00000314759 ANKRD20A4Q4UJ75 823 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 LCLAT1Q6UWP7 414 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 OLFML1Q6UWY5 402 aa13.82□□□□□ -0.2
SKA3-202ENST00000314759 CATSPERGQ6ZRH7 1159 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms