RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 CES3Q6UWW8 571 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 SLC22A9Q8IVM8 553 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 TMEM245Q9H330 911 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 SH3BP4Q9P0V3 963 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 LZTS1Q9Y250 596 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 POU1F1P28069 291 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 AQP5P55064 265 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 CAPRIN2Q6IMN6 1127 aaKnown RBP17.7■□□□□ 0.42
SHANK1-201ENST00000293441 LRRC8DQ7L1W4 858 aa17.7■□□□□ 0.42
SHANK1-201ENST00000293441 IRF6O14896 467 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 GJB6O95452 261 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 TMEM154Q6P9G4 183 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 RGS18Q9NS28 235 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 MPP6Q9NZW5 540 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 OR56A5P0C7T3 313 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 SMIM10L2AP0DMW4 78 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 SMIM10L2BP0DMW5 78 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 DSG4Q86SJ6 1040 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 RERGLQ9H628 205 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 UBA2Q9UBT2 640 aaPredicted RBP17.69■□□□□ 0.42
SHANK1-201ENST00000293441 SOX13Q9UN79 622 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 PCYT1AP49585 367 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 NCKIPSDQ9NZQ3 722 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 MSRAQ9UJ68 235 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 HAO1Q9UJM8 370 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 E5RJQ4 531 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 IRAK1P51617 712 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 HIRAP54198 1017 aaPredicted RBP17.69■□□□□ 0.42
SHANK1-201ENST00000293441 CHRNB3Q05901 458 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 VN1R5Q7Z5H4 357 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 FAM9CQ8IZT9 166 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 DCLK3Q9C098 648 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 ZCCHC2Q9C0B9 1178 aaKnown RBP17.69■□□□□ 0.42
SHANK1-201ENST00000293441 NRCAMQ92823 1304 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 HOXC6P09630 235 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 TRIP4Q15650 581 aaPredicted RBP17.69■□□□□ 0.42
SHANK1-201ENST00000293441 TRIM69Q86WT6 500 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 ULBP1Q9BZM6 244 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 PCDH9Q9HC56 1237 aa17.69■□□□□ 0.42
SHANK1-201ENST00000293441 RAD51BO15315 384 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 SETMARQ53H47 684 aaPredicted RBP17.68■□□□□ 0.42
SHANK1-201ENST00000293441 POPDC2Q9HBU9 364 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 DEPDC5O75140 1603 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 TISP43B9A030 160 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 CAPN15O75808 1086 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 BAIAP3O94812 1187 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 LTFP02788 710 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 ZNF7P17097 686 aaPredicted RBP17.68■□□□□ 0.42
SHANK1-201ENST00000293441 NLNQ9BYT8 704 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 TBC1D3BA6NDS4 549 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 M0R3G1 203 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 KCNMA1Q12791 1236 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 WSCD1Q658N2 575 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 PDPK2PQ6A1A2 396 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 TTC33Q6PID6 262 aaPredicted RBP17.68■□□□□ 0.42
SHANK1-201ENST00000293441 TMEM199Q8N511 208 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 FBXO25Q8TCJ0 367 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 DNAJC9Q8WXX5 260 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 SCAMP3O14828 347 aaKnown RBP17.68■□□□□ 0.42
SHANK1-201ENST00000293441 PAEPP09466 180 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 GRTP1Q5TC63 336 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 FAM180AQ6UWF9 173 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 SEMA4DQ92854 862 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 KCNK1O00180 336 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 MTA2O94776 668 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 ATP6V1B2P21281 511 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 NR2C2P49116 596 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 MRPS6P82932 125 aaKnown RBP17.68■□□□□ 0.42
SHANK1-201ENST00000293441 SP3Q02447 781 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 ICE2Q659A1 982 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 TMEM86AQ8N2M4 240 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 ABCC13Q9NSE7 274 aa17.68■□□□□ 0.42
SHANK1-201ENST00000293441 MOXD2PA6NHM9 499 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CTNNB1P35222 781 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CASP7P55210 303 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 KLC1Q07866 573 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 TCEA2Q15560 299 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 GJC2Q5T442 439 aaPredicted RBP17.67■□□□□ 0.42
SHANK1-201ENST00000293441 RGL4Q8IZJ4 473 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 ZNF558Q96NG5 402 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 APBA2Q99767 749 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 PCDHAC2Q9Y5I4 1007 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CCND1P24385 295 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 MRPS15P82914 257 aaKnown RBP17.67■□□□□ 0.42
SHANK1-201ENST00000293441 TMEM120AQ9BXJ8 343 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 LACRTQ9GZZ8 138 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 PORCNQ9H237 461 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CYP39A1Q9NYL5 469 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CAB39Q9Y376 341 aaPredicted RBP17.67■□□□□ 0.42
SHANK1-201ENST00000293441 MICU2Q8IYU8 434 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 SUSD6Q92537 303 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 SPACA7Q96KW9 195 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CATSPER2Q96P56 530 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 TMBIM4Q9HC24 238 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 MARCH2Q9P0N8 246 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 TUBGCP4Q9UGJ1 667 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 CABYRO75952 493 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 FMO4P31512 558 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 MMRN1Q13201 1228 aa17.67■□□□□ 0.42
SHANK1-201ENST00000293441 BNC2Q6ZN30 1099 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms