RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CTNND2Q9UQB3 1225 aa13.3□□□□□ -0.28
CD44-203ENST00000278386 PCDHB9Q9Y5E1 797 aa13.3□□□□□ -0.28
CD44-203ENST00000278386 TYW5A2RUC4 315 aaKnown RBP13.29□□□□□ -0.28
CD44-203ENST00000278386 TMEM8BA6NDV4 472 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 TIMM44O43615 452 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 SH3BP5O60239 455 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 LTFP02788 710 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 PABPC1P11940 636 aaKnown RBP13.29□□□□□ -0.28
CD44-203ENST00000278386 CD59P13987 128 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 PPP1R2P41236 205 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 SGSHP51688 502 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 FAM193AP78312 1265 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 STILQ15468 1287 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 PKDCCQ504Y2 493 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 ADGRF1Q5T601 910 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 NUGGCQ68CJ6 796 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 MSANTD2Q6P1R3 559 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 RFWD3Q6PCD5 774 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 RBBP8NLQ8NC74 664 aaPredicted RBP13.29□□□□□ -0.28
CD44-203ENST00000278386 ENGASEQ8NFI3 743 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 CADM4Q8NFZ8 388 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 SPATA20Q8TB22 786 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 CLEC4CQ8WTT0 213 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 ZCCHC14Q8WYQ9 949 aaKnown RBP13.29□□□□□ -0.28
CD44-203ENST00000278386 TFAP2BQ92481 460 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 GATA6Q92908 595 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 KAT5Q92993 513 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 DHTKD1Q96HY7 919 aaPredicted RBP13.29□□□□□ -0.28
CD44-203ENST00000278386 CAMK1GQ96NX5 476 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 NUP58Q9BVL2 599 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 ZDHHC5Q9C0B5 715 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 MAN1B1Q9UKM7 699 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 KLK13Q9UKR3 277 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.29□□□□□ -0.28
CD44-203ENST00000278386 PLA2G4CQ9UP65 541 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 NEUROG3Q9Y4Z2 214 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 IGF2RP11717 2491 aa13.29□□□□□ -0.28
CD44-203ENST00000278386 H0Y626 953 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 TBL1XO60907 577 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 TRIM16O95361 564 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 CER1O95813 267 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 CALCAP01258 141 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 POLR2EP19388 210 aaKnown RBP13.28□□□□□ -0.28
CD44-203ENST00000278386 SLC11A2P49281 568 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 TBX4P57082 545 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 NUCB2P80303 420 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 SLC14A1Q13336 389 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 HNRNPDQ14103 355 aaKnown RBP13.28□□□□□ -0.28
CD44-203ENST00000278386 MBLAC2Q68D91 279 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 PMF1Q6P1K2 205 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 MFN1Q8IWA4 741 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 UNC45BQ8IWX7 931 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 SCML4Q8N228 414 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 WFDC5Q8TCV5 224 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 NELFBQ8WX92 580 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 DNASE2BQ8WZ79 361 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 IRGQQ8WZA9 623 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 TIGD1Q96MW7 591 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 TMEM121BQ9BXQ6 578 aaPredicted RBP13.28□□□□□ -0.28
CD44-203ENST00000278386 MIS12Q9H081 205 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 STIM2Q9P246 746 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 EIF2B4Q9UI10 523 aaKnown RBP13.28□□□□□ -0.28
CD44-203ENST00000278386 STOML2Q9UJZ1 356 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 NFE2L3Q9Y4A8 694 aa13.28□□□□□ -0.28
CD44-203ENST00000278386 PTPRBP23467 1997 aa13.27□□□□□ -0.28
CD44-203ENST00000278386 GOLGA6L7A0A1B0GV03 622 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 BICDL2A1A5D9 508 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 BCAT2O15382 392 aaPredicted RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 ACSL4O60488 711 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 GJB3O75712 270 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 FBXO21O94952 628 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 IGLV3-19P01714 112 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 DNTTP04053 509 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 ATP5BP06576 529 aaKnown RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 KRT5P13647 590 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 CD44P16070 742 aaKnown RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 CD70P32970 193 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 MATKP42679 507 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 CAMK2GQ13555 558 aaPredicted RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 TRIP6Q15654 476 aaKnown RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 ZNF423Q2M1K9 1284 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 TTC31Q49AM3 519 aaPredicted RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 RRAGAQ7L523 313 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 ADIPOR2Q86V24 386 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 ARHGEF19Q8IW93 802 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 CHCHD4Q8N4Q1 142 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.27□□□□□ -0.29
CD44-203ENST00000278386 ZNF557Q8N988 423 aaPredicted RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 HJURPQ8NCD3 748 aaPredicted RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 SETD7Q8WTS6 366 aaKnown RBP13.27□□□□□ -0.29
CD44-203ENST00000278386 SLC35F5Q8WV83 523 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 FAM149B1Q96BN6 582 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 SERPINB11Q96P15 392 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 GAREM1Q9H706 876 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 FBRSQ9HAH7 460 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 ST7Q9NRC1 585 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 MSRB2Q9Y3D2 182 aa13.27□□□□□ -0.29
CD44-203ENST00000278386 METTL12A8MUP2 240 aa13.26□□□□□ -0.29
CD44-203ENST00000278386 RNF225M0QZC1 329 aaPredicted RBP13.26□□□□□ -0.29
CD44-203ENST00000278386 BIN1O00499 593 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms