RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FUT2Q10981 343 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CYP51A1Q16850 503 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CTXN3Q4LDR2 81 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 EDEM1Q92611 657 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 PHF21BQ96EK2 531 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CATSPER2Q96P56 530 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 PPP1R10Q96QC0 940 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 ADGRE3Q9BY15 652 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 SORCS3Q9UPU3 1222 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 REXO2Q9Y3B8 237 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 RIC1Q4ADV7 1423 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 DCXO43602 365 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 BAIAP3O94812 1187 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 VAPBO95292 243 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 EGFRP00533 1210 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 NR6A1Q15406 480 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 GRIK4Q16099 956 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 BMT2Q1RMZ1 405 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 TBCELQ5QJ74 424 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 FAM117BQ6P1L5 589 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 IRF2BP1Q8IU81 584 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 TMEM161BQ8NDZ6 487 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ZBTB10Q96DT7 871 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 HSD17B14Q9BPX1 270 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 RNPEPL1Q9HAU8 725 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ADARB2Q9NS39 739 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 GEMIN8Q9NWZ8 242 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 SFMBT1Q9UHJ3 866 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CAMTA1Q9Y6Y1 1673 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CXCL11O14625 94 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CHADO15335 359 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 ADRB2P07550 413 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 SKIV2L2P42285 1042 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 MRPL28Q13084 256 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 SLC44A4Q53GD3 710 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CCDC92Q53HC0 331 aaPredicted RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 IRGCQ6NXR0 463 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CENPLQ8N0S6 344 aaPredicted RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 TERB1Q8NA31 727 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 CERKQ8TCT0 537 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 BHMTQ93088 406 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 VPS33AQ96AX1 596 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 MTIF3Q9H2K0 278 aaKnown RBP11.01□□□□□ -0.65
CD44-201ENST00000263398 GIMAP4Q9NUV9 329 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 TRPM5Q9NZQ8 1165 aa11.01□□□□□ -0.65
CD44-201ENST00000263398 PDE5AO76074 875 aa11□□□□□ -0.65
CD44-201ENST00000263398 UNC5CO95185 931 aa11□□□□□ -0.65
CD44-201ENST00000263398 RHOCP08134 193 aa11□□□□□ -0.65
CD44-201ENST00000263398 HOXB8P17481 243 aaPredicted RBP11□□□□□ -0.65
CD44-201ENST00000263398 RPA3P35244 121 aaPredicted RBP11□□□□□ -0.65
CD44-201ENST00000263398 KPNA1P52294 538 aaPredicted RBP11□□□□□ -0.65
CD44-201ENST00000263398 HPCAP84074 193 aa11□□□□□ -0.65
CD44-201ENST00000263398 FMO1Q01740 532 aa11□□□□□ -0.65
CD44-201ENST00000263398 WASHC5Q12768 1159 aa11□□□□□ -0.65
CD44-201ENST00000263398 ZNF470Q6ECI4 717 aa11□□□□□ -0.65
CD44-201ENST00000263398 OVOS1Q6IE37 1185 aa11□□□□□ -0.65
CD44-201ENST00000263398 IQCKQ8N0W5 287 aa11□□□□□ -0.65
CD44-201ENST00000263398 ZNF398Q8TD17 642 aa11□□□□□ -0.65
CD44-201ENST00000263398 SLC2A14Q8TDB8 520 aa11□□□□□ -0.65
CD44-201ENST00000263398 PHF21AQ96BD5 680 aa11□□□□□ -0.65
CD44-201ENST00000263398 TMEM245Q9H330 911 aa11□□□□□ -0.65
CD44-201ENST00000263398 EPS8L2Q9H6S3 715 aa11□□□□□ -0.65
CD44-201ENST00000263398 NMRAL1Q9HBL8 299 aa11□□□□□ -0.65
CD44-201ENST00000263398 ANKRD6Q9Y2G4 727 aa11□□□□□ -0.65
CD44-201ENST00000263398 FSCN2O14926 492 aa11□□□□□ -0.65
CD44-201ENST00000263398 LIASO43766 372 aa11□□□□□ -0.65
CD44-201ENST00000263398 TSHRP16473 764 aa11□□□□□ -0.65
CD44-201ENST00000263398 ACAT1P24752 427 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 MARSP56192 900 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 ZNF280DQ6N043 979 aa11□□□□□ -0.65
CD44-201ENST00000263398 ZCCHC23Q6ZST2 131 aa11□□□□□ -0.65
CD44-201ENST00000263398 ZNF410Q86VK4 478 aa11□□□□□ -0.65
CD44-201ENST00000263398 TMEM139Q8IV31 216 aa11□□□□□ -0.65
CD44-201ENST00000263398 PIWIL2Q8TC59 973 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 TRAPPC12Q8WVT3 735 aa11□□□□□ -0.65
CD44-201ENST00000263398 ART4Q93070 314 aa11□□□□□ -0.65
CD44-201ENST00000263398 NMD3Q96D46 503 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 NSMCE2Q96MF7 247 aa11□□□□□ -0.65
CD44-201ENST00000263398 PALMDQ9NP74 551 aa11□□□□□ -0.65
CD44-201ENST00000263398 SCUBE2Q9NQ36 999 aa11□□□□□ -0.65
CD44-201ENST00000263398 UTP6Q9NYH9 597 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 ZMYM2Q9UBW7 1377 aa11□□□□□ -0.65
CD44-201ENST00000263398 RAMP2O60895 175 aa11□□□□□ -0.65
CD44-201ENST00000263398 OCM2P0CE71 109 aa11□□□□□ -0.65
CD44-201ENST00000263398 OCMP0CE72 109 aaPredicted RBP11□□□□□ -0.65
CD44-201ENST00000263398 ZNF286BP0CG31 522 aa11□□□□□ -0.65
CD44-201ENST00000263398 ATP6V1B2P21281 511 aa11□□□□□ -0.65
CD44-201ENST00000263398 FBXW4P57775 412 aa11□□□□□ -0.65
CD44-201ENST00000263398 CNTN2Q02246 1040 aa11□□□□□ -0.65
CD44-201ENST00000263398 ANKS6Q68DC2 871 aa11□□□□□ -0.65
CD44-201ENST00000263398 PRMT9Q6P2P2 845 aa11□□□□□ -0.65
CD44-201ENST00000263398 MRPS31Q92665 395 aaKnown RBP11□□□□□ -0.65
CD44-201ENST00000263398 TMEM79Q9BSE2 394 aa11□□□□□ -0.65
CD44-201ENST00000263398 ACTR8Q9H981 624 aa11□□□□□ -0.65
CD44-201ENST00000263398 PNMA8BQ9ULN7 279 aaPredicted RBP11□□□□□ -0.65
CD44-201ENST00000263398 MRASO14807 208 aa10.99□□□□□ -0.65
CD44-201ENST00000263398 HOXA2O43364 376 aa10.99□□□□□ -0.65
CD44-201ENST00000263398 FGRP09769 529 aa10.99□□□□□ -0.65
CD44-201ENST00000263398 CCDC159P0C7I6 412 aa10.99□□□□□ -0.65
CD44-201ENST00000263398 YBX3P16989 372 aaKnown RBP eCLIP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms