RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SLC27A6Q9Y2P4 619 aa19.02■□□□□ 0.64
CLN3-259ENST00000637551 LUC7L2Q9Y383 392 aaKnown RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 MTF2Q9Y483 593 aaPredicted RBP19.02■□□□□ 0.64
CLN3-259ENST00000637551 ZNF292O60281 2723 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 PIK3R2O00459 728 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 DCNP07585 359 aaKnown RBP19.01■□□□□ 0.63
CLN3-259ENST00000637551 CCR1P32246 355 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 TNFRSF4P43489 277 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 GALK1P51570 392 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 ARID5BQ14865 1188 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 MPPE1Q53F39 396 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 DCAF6Q58WW2 860 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 SYPL2Q5VXT5 272 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 FSTL4Q6MZW2 842 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 TAC4Q86UU9 113 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 VPS36Q86VN1 386 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 DENND1CQ8IV53 801 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 C3orf20Q8ND61 904 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 TTC16Q8NEE8 873 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 WBP2Q969T9 261 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 ACDQ96AP0 544 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 PIWIL1Q96J94 861 aaKnown RBP19.01■□□□□ 0.63
CLN3-259ENST00000637551 FCRL2Q96LA5 508 aaPredicted RBP19.01■□□□□ 0.63
CLN3-259ENST00000637551 NPY6RQ99463 290 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 BBS2Q9BXC9 721 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 XPO4Q9C0E2 1151 aaKnown RBP19.01■□□□□ 0.63
CLN3-259ENST00000637551 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.01■□□□□ 0.63
CLN3-259ENST00000637551 DEC1Q9P2X7 70 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 TJP2Q9UDY2 1190 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 SLC12A6Q9UHW9 1150 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 TMEM59LQ9UK28 342 aa19.01■□□□□ 0.63
CLN3-259ENST00000637551 DNAH14Q0VDD8 3507 aa19■□□□□ 0.63
CLN3-259ENST00000637551 DMXL1Q9Y485 3027 aa19■□□□□ 0.63
CLN3-259ENST00000637551 NPC1O15118 1278 aa19■□□□□ 0.63
CLN3-259ENST00000637551 APODP05090 189 aa19■□□□□ 0.63
CLN3-259ENST00000637551 MRPS21P82921 87 aaKnown RBP19■□□□□ 0.63
CLN3-259ENST00000637551 SLC25A52Q3SY17 297 aa19■□□□□ 0.63
CLN3-259ENST00000637551 BRMS1LQ5PSV4 323 aa19■□□□□ 0.63
CLN3-259ENST00000637551 FAM102AQ5T9C2 384 aaPredicted RBP19■□□□□ 0.63
CLN3-259ENST00000637551 TTC39BQ5VTQ0 682 aaPredicted RBP19■□□□□ 0.63
CLN3-259ENST00000637551 MON1BQ7L1V2 547 aa19■□□□□ 0.63
CLN3-259ENST00000637551 BNIPLQ7Z465 357 aa19■□□□□ 0.63
CLN3-259ENST00000637551 TMEM25Q86YD3 366 aa19■□□□□ 0.63
CLN3-259ENST00000637551 DEFB106AQ8N104 65 aa19■□□□□ 0.63
CLN3-259ENST00000637551 PHTF2Q8N3S3 785 aa19■□□□□ 0.63
CLN3-259ENST00000637551 CPA5Q8WXQ8 436 aa19■□□□□ 0.63
CLN3-259ENST00000637551 STARD13Q9Y3M8 1113 aa19■□□□□ 0.63
CLN3-259ENST00000637551 TYW5A2RUC4 315 aaKnown RBP18.99■□□□□ 0.63
CLN3-259ENST00000637551 MSI1O43347 362 aaKnown RBP18.99■□□□□ 0.63
CLN3-259ENST00000637551 LAMTOR5O43504 91 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 ACSL4O60488 711 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 TULP3O75386 442 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 GYPCP04921 128 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 TYRP14679 529 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 ARID5AQ03989 594 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 KLHL30Q0D2K2 578 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 PTP4A2Q12974 167 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 EIF4HQ15056 248 aaKnown RBP18.99■□□□□ 0.63
CLN3-259ENST00000637551 FYB2Q5VWT5 728 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 TRMT11Q7Z4G4 463 aaKnown RBP18.99■□□□□ 0.63
CLN3-259ENST00000637551 ATP6V0D2Q8N8Y2 350 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 TERB1Q8NA31 727 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 TRIM11Q96F44 468 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 ADAM22Q9P0K1 906 aa18.99■□□□□ 0.63
CLN3-259ENST00000637551 MYO18AQ92614 2054 aaKnown RBP18.98■□□□□ 0.63
CLN3-259ENST00000637551 CCDC163A0A0D9SF12 145 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 KCNU1A8MYU2 1149 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 ENDOD1O94919 500 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 KAT7O95251 611 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 TPM1P09493 284 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 PTPN9P43378 593 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 NRLP54845 237 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 ANO4Q32M45 955 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 GRAMD4Q6IC98 578 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 ACAD10Q6JQN1 1059 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 MMS22LQ6ZRQ5 1243 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 SND1Q7KZF4 910 aaKnown RBP eCLIP18.98■□□□□ 0.631e-7■■■□□ 15.8
CLN3-259ENST00000637551 VSTM4Q8IW00 320 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 OLIG1Q8TAK6 271 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 TTC8Q8TAM2 541 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 NELL1Q92832 810 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 PCDHB18PQ96TA0 734 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 SEMA4AQ9H3S1 761 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 FAM204AQ9H8W3 233 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 ARHGEF4Q9NR80 690 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 DDIT4Q9NX09 232 aa18.98■□□□□ 0.63
CLN3-259ENST00000637551 NEDD8-MDP1E9PL57 170 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 SERPING1P05155 500 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 HMBSP08397 361 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 MYBL1P10243 752 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 ABCB4P21439 1286 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 TNFAIP3P21580 790 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 CXCR3P49682 368 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 MTAPQ13126 283 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 ANGPT1Q15389 498 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 TAF5Q15542 800 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 FAM133BQ5BKY9 247 aaKnown RBP18.97■□□□□ 0.63
CLN3-259ENST00000637551 ZC3H14Q6PJT7 736 aaKnown RBP18.97■□□□□ 0.63
CLN3-259ENST00000637551 SYT13Q7L8C5 426 aa18.97■□□□□ 0.63
CLN3-259ENST00000637551 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms