RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ABCE1P61221 599 aaKnown RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 DGKZQ13574 1117 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 ANGEL2Q5VTE6 544 aaKnown RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 FAM131BQ86XD5 332 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 MYO1HQ8N1T3 1032 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 FBXW8Q8N3Y1 598 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 MPHOSPH6Q99547 160 aaKnown RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 WDR41Q9HAD4 459 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 XPNPEP3Q9NQH7 507 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 A0A096LPK6 155 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 TPH1P17752 444 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 PCYT1AP49585 367 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 STAT5BP51692 787 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 SLC18A1P54219 525 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 YWHAZP63104 245 aaKnown RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 TTLL12Q14166 644 aaPredicted RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 AMHR2Q16671 573 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 GLRA4Q5JXX5 417 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 KYAT3Q6YP21 454 aaKnown RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 SCUBE3Q8IX30 993 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 NAT8LQ8N9F0 302 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 HSPBAP1Q96EW2 488 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 NRBF2Q96F24 287 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 ZNF518BQ9C0D4 1074 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 ZNF358Q9NW07 568 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 CCDC167Q9P0B6 97 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 PSMD13Q9UNM6 376 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 C1orf232A0A0U1RR37 186 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 TTLL13PA6NNM8 815 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 SPDYE16A6NNV3 312 aaPredicted RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 H3BSA7 217 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 ENTPD3O75355 529 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 PIGNO95427 931 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 IL1R2P27930 398 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 RAP1GDS1P52306 607 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 PTPN11Q06124 597 aaPredicted RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 KLF10Q13118 480 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 AGKQ53H12 422 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 COLGALT1Q8NBJ5 622 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 SLC35B2Q8TB61 432 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 FRMD8P1Q9BZ68 369 aaPredicted RBP11.34□□□□□ -0.59
CLN3-244ENST00000636147 COG4Q9H9E3 785 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 LRRC4Q9HBW1 653 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 MYRFQ9Y2G1 1151 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 COQ4Q9Y3A0 265 aa11.34□□□□□ -0.59
CLN3-244ENST00000636147 SIGLEC16A6NMB1 481 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 PHGDHO43175 533 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 TRIM13O60858 407 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 CCNE2O96020 404 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 IL10P22301 178 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 CYP2F1P24903 491 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 GCAP28676 217 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 HSPA13P48723 471 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 NAA20P61599 178 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 OCA2Q04671 838 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 PGM5Q15124 567 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 KLHDC10Q6PID8 442 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 CCDC60Q8IWA6 550 aaPredicted RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 SDCCAG3Q96C92 435 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 MASTLQ96GX5 879 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SLC4A5Q9BY07 1137 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SSU72Q9NP77 194 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 COL20A1Q9P218 1284 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 ADAMTS6Q9UKP5 1117 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 BHMG1C9JSJ3 638 aaPredicted RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 CHRNA5P30532 468 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 STXBP2Q15833 593 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 TFAP2BQ92481 460 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 VPS33BQ9H267 617 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SNX25Q9H3E2 840 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 LMCD1Q9NZU5 365 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SORCS3Q9UPU3 1222 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 RUVBL2Q9Y230 463 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 TRDMT1O14717 391 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 ZNF862O60290 1169 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SLC4A1P02730 911 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 ASLP04424 464 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 EIF4BP23588 611 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 AP3M2P53677 418 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 TRIM16LQ309B1 348 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 SH3PXD2AQ5TCZ1 1133 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 RWDD4Q6NW29 188 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 PHTF2Q8N3S3 785 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 CPXM1Q96SM3 734 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 EBNA1BP2Q99848 306 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 PIF1Q9H611 641 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 CAB39LQ9H9S4 337 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 XPNPEP1Q9NQW7 623 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 IARS2Q9NSE4 1012 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 PTTG2Q9NZH5 202 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 RSL24D1Q9UHA3 163 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 AFG3L2Q9Y4W6 797 aa11.33□□□□□ -0.6
CLN3-244ENST00000636147 MRPL42Q9Y6G3 142 aaKnown RBP11.33□□□□□ -0.6
CLN3-244ENST00000636147 OGTO15294 1046 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CHADO15335 359 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 CXCL8P10145 99 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 GNL1P36915 607 aaPredicted RBP11.32□□□□□ -0.6
CLN3-244ENST00000636147 GRIA1P42261 906 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 LPIN1Q14693 890 aa11.32□□□□□ -0.6
CLN3-244ENST00000636147 FRMD7Q6ZUT3 714 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms