RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.17□□□□□ -0.3
LINC00540-203ENST00000631321 PSMG1O95456 288 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 AMPD1P23109 780 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 PGM1P36871 562 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 STX3Q13277 289 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 MOB2Q70IA6 237 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 LIMS2Q7Z4I7 341 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 WDR60Q8WVS4 1066 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 KBTBD7Q8WVZ9 684 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 OPTNQ96CV9 577 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 CCDC106Q9BWC9 280 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 C20orf27Q9GZN8 174 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 STX18Q9P2W9 335 aaKnown RBP13.17□□□□□ -0.3
LINC00540-203ENST00000631321 TAGLN3Q9UI15 199 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 FZD10Q9ULW2 581 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 PLA2G4CQ9UP65 541 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 SORCS3Q9UPU3 1222 aa13.17□□□□□ -0.3
LINC00540-203ENST00000631321 SRCAPQ6ZRS2 3230 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 CCDC195A0A1B0GUA6 201 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 SDR42E2A6NKP2 422 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 F8W8V4 182 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 NVLO15381 856 aaKnown RBP13.16□□□□□ -0.3
LINC00540-203ENST00000631321 OPHN1O60890 802 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 KRT36O76013 467 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 DDNO94850 711 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-203ENST00000631321 CCDC130P13994 396 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 AQP5P55064 265 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 SLC34A1Q06495 639 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 ANO7Q6IWH7 933 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 DENND5BQ6ZUT9 1274 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 ZNF467Q7Z7K2 595 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-203ENST00000631321 GTF3C2Q8WUA4 911 aaPredicted RBP13.16□□□□□ -0.3
LINC00540-203ENST00000631321 NMRK1Q9NWW6 199 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 PPARGC1AQ9UBK2 798 aaKnown RBP13.16□□□□□ -0.3
LINC00540-203ENST00000631321 EMCNQ9ULC0 261 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 MFHAS1Q9Y4C4 1052 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 SF3B1O75533 1304 aaKnown RBP eCLIP13.16□□□□□ -0.35e-10■■■■■ 120.6
LINC00540-203ENST00000631321 CITO14578 2027 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 RALGAPA2Q2PPJ7 1873 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 SCN1AP35498 2009 aa13.16□□□□□ -0.3
LINC00540-203ENST00000631321 WDR27A2RRH5 827 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 DCAF8L1A6NGE4 600 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 B2RBV5 119 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 PIRO00625 290 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 SERPINA6P08185 405 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 GOT1P17174 413 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ADCYAP1R1P41586 468 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 MATKP42679 507 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 MBLAC2Q68D91 279 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 BNIPLQ7Z465 357 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 LMNTD2Q8IXW0 634 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 C7orf31Q8N865 590 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 NLGN2Q8NFZ4 835 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ARNTL2Q8WYA1 636 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 EIF2AQ9BY44 585 aaKnown RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 STN1Q9H668 368 aaKnown RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 GDAP2Q9NXN4 497 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 GJD2Q9UKL4 321 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 UBQLN1Q9UMX0 589 aaKnown RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 HCRTO43612 131 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ALDOAP04075 364 aaKnown RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 LCP1P13796 627 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 PGAM1P18669 254 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ADORA2AP29274 412 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ADORA2BP29275 332 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ARL4AP40617 200 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 GLUD2P49448 558 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 CDC42EP1Q00587 391 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 PCBP1Q15365 356 aaKnown RBP eCLIP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 CCDC6Q16204 474 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 KIZQ2M2Z5 673 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 SLC25A52Q3SY17 297 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 EFHC1Q5JVL4 640 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 SNX30Q5VWJ9 437 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 PACS1Q6VY07 963 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 PAXIP1Q6ZW49 1069 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 COLGALT1Q8NBJ5 622 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 RBM15BQ8NDT2 890 aaKnown RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 CDCA5Q96FF9 252 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 NAT9Q9BTE0 207 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 TRIM6Q9C030 488 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-203ENST00000631321 C1orf21Q9H246 121 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 XPNPEP3Q9NQH7 507 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 ZFATQ9P243 1243 aa13.15□□□□□ -0.3
LINC00540-203ENST00000631321 SPECC1L-ADORA2AF8WAN1 911 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 MFSD11O43934 449 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 GLRA3O75311 464 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 GPR32O75388 356 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 ENO1P06733 434 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 AOC1P19801 751 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 CDC25CP30307 473 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 GNL1P36915 607 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 MRPS35P82673 323 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 DNAL1Q4LDG9 190 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 FASTKD1Q53R41 847 aaKnown RBP13.14□□□□□ -0.31
LINC00540-203ENST00000631321 FBXO47Q5MNV8 452 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TEDDM1Q5T9Z0 273 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 TRIM68Q6AZZ1 485 aa13.14□□□□□ -0.31
LINC00540-203ENST00000631321 NOTUMQ6P988 496 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms