RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 EBF1Q9UH73 591 aa13.22□□□□□ -0.29
PNKP-217ENST00000625216 ADAMTS1Q9UHI8 967 aa13.22□□□□□ -0.29
PNKP-217ENST00000625216 TSPAN16Q9UKR8 245 aa13.22□□□□□ -0.29
PNKP-217ENST00000625216 SCAMP3O14828 347 aaKnown RBP13.21□□□□□ -0.29
PNKP-217ENST00000625216 AXIN1O15169 862 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 ZSCAN12O43309 604 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 FOXD2O60548 495 aaPredicted RBP13.21□□□□□ -0.29
PNKP-217ENST00000625216 ZBED1O96006 694 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 SETSIPP0DME0 302 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 VAV2P52735 878 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 CDR2Q01850 454 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 PDE4CQ08493 712 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 CNGA2Q16280 664 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 GOLGA7BQ2TAP0 167 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 SMYD5Q6GMV2 418 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 LCLAT1Q6UWP7 414 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 TMEM25Q86YD3 366 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 KCTD13Q8WZ19 329 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 LOXL4Q96JB6 756 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 XPO6Q96QU8 1125 aaKnown RBP13.21□□□□□ -0.29
PNKP-217ENST00000625216 ZSWIM1Q9BR11 485 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 LRRC4Q9HBW1 653 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 MARK1Q9P0L2 795 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 TRIM10Q9UDY6 481 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 STRIP2Q9ULQ0 834 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 MMP17Q9ULZ9 603 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 PCDHA13Q9Y5I0 950 aa13.21□□□□□ -0.29
PNKP-217ENST00000625216 TBC1D3BA6NDS4 549 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 PRR5-ARHGAP8B1AHC4 643 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 O00370 1275 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 CCP110O43303 1012 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 TULP3O75386 442 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 RPP40O75818 363 aaKnown RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 TNFAIP3P21580 790 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 BRD2P25440 801 aaKnown RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 GNA15P30679 374 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 MAGEA1P43355 309 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 PXNP49023 591 aaPredicted RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 TKTL1P51854 596 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 DGKEP52429 567 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 YWHAGP61981 247 aaKnown RBP eCLIP13.2□□□□□ -0.3
PNKP-217ENST00000625216 KRT83P78385 493 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 ARHGAP8P85298 464 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 FOXK2Q01167 660 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 LMNB2Q03252 620 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 SRSF5Q13243 272 aaKnown RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 SPA17Q15506 151 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 ANO4Q32M45 955 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 C2orf27AQ580R0 203 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 EOGTQ5NDL2 527 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 Q6ZNB5 142 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 KIAA1328Q86T90 577 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 VPS36Q86VN1 386 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 C12orf40Q86WS4 652 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 SCML4Q8N228 414 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 PHTF2Q8N3S3 785 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 TSTD1Q8NFU3 115 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 TFAP2BQ92481 460 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 WBP2Q969T9 261 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 PACSIN1Q9BY11 444 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 LACRTQ9GZZ8 138 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 OLA1Q9NTK5 396 aaKnown RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 SEPT11Q9NVA2 429 aaKnown RBP13.2□□□□□ -0.3
PNKP-217ENST00000625216 TAS2R14Q9NYV8 317 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 NUDT5Q9UKK9 219 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 MYH10P35580 1976 aa13.2□□□□□ -0.3
PNKP-217ENST00000625216 SPTBN4Q9H254 2564 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 FAM170AA1A519 330 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 THAP12O43422 761 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 STC2O76061 302 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 ALDH1A2O94788 518 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 IPO7O95373 1038 aaKnown RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 TGM1P22735 817 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 CHKAP35790 457 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 KIR2DL1P43626 348 aaPredicted RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 SEC13P55735 322 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 BPIFB4P59827 614 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 PUM1Q14671 1186 aaKnown RBP eCLIP13.19□□□□□ -0.3
PNKP-217ENST00000625216 CRY1Q16526 586 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 LPAL2Q16609 132 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 PKDCCQ504Y2 493 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 CCDC122Q5T0U0 273 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 ALKBH5Q6P6C2 394 aaKnown RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 NYAP1Q6ZVC0 841 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 RSRC2Q7L4I2 434 aaKnown RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 ERMP1Q7Z2K6 904 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 TRMT11Q7Z4G4 463 aaKnown RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 C11orf74Q86VG3 221 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 ZNF677Q86XU0 584 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 MIB1Q86YT6 1006 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 NAT16Q8N8M0 369 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 IL17RCQ8NAC3 791 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 SLC35F5Q8WV83 523 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 ZC3H10Q96K80 434 aaKnown RBP13.19□□□□□ -0.3
PNKP-217ENST00000625216 HSFY1Q96LI6 401 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 HHIPQ96QV1 700 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 BBS2Q9BXC9 721 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 ULBP1Q9BZM6 244 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 CNGB3Q9NQW8 809 aa13.19□□□□□ -0.3
PNKP-217ENST00000625216 MARCH2Q9P0N8 246 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms